fmriprep
is a Nipype-based pipeline that combines software from several neuroimaging packages with custom-written code to flexibly apply state-of-the-art preprocessing algorithms to a wide variety of structural and functional neuroimages and generate readable reports. For a full list of external software and relevant citations (where available) of tools and algorithms, please see the REFERENCES.md table in the source distribution. Please cite the relevant packages to your use case. fmriprep
may be cited by its Zenodo reference:
@misc{esteban_oscar_2017_996169,
author = {Esteban, Oscar and
Blair, Ross and
Markiewicz, Christopher J. and
Berleant, Shoshana L. and
Moodie, Craig and
Ma, Feilong and
Isik, Ayse Ilkay and
Erramuzpe, Asier and
Goncalves, Mathias and
Poldrack, Russell A. and
Gorgolewski, Krzysztof J.},
title = {poldracklab/fmriprep: 1.0.0-rc5},
month = sep,
year = 2017,
doi = {10.5281/zenodo.996169},
url = {https://doi.org/10.5281/zenodo.996169}
}
- Organization for Human Brain Mapping 2017 (pdf)