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index.Rmd
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index.Rmd
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---
title: "Home"
site: workflowr::wflow_site
output:
workflowr::wflow_html:
toc: false
---
# **Pairwise Comparisons of Conditional Selection**
* ###Click [here](alkati_subsampling_simulations.html) to see subsampling simulations on ALK^ATI^ data.
![](docs/assets/atisubsamplingsims.png)
* ###Click [here](ALKATI_Filter_Cutoff_Analysis.html) to see my results on ALK^ATI^ filter cutoff analyses.
![](docs/assets/aticutoffs.png)
* ###Click [here](ALK_ExonImbalance_SKCM_Analysis.html) to see my results on ALK-expression in SKCM. ![](docs/assets/atiskcmexpression.png)
* ###Click [here](TCGA_luad_data_parser.html) to see my results on ALK expression in LUAD.
![](docs/assets/atiluadexpression.png)
* ###Click [here]() to see my results on EGFR expression in LUAD.
![](docs/assets/egfrluadexpression.png)
* ###Click [here]() to ALK^ATI^ cell line expression data analysis showing that ALK^ATI^ is necessary in melanoma.
![](docs/assets/ccle.png)
#### Click [here](https://github.com/pritchardlabatpsu/pair_con_select) to be redirected to the github page that contains all my data.
What’s in each directory:
* **Data**: contains data downloaded from internet
* **Output**: contains data that your code makes
* **Analysis**: contains your Rmarkdown files that are converted to PDFs
* **Code**: contains .R files that are functions that your Rmd files in the analysis folder goes off of.