- :func:`.addCoordset` in :class:`.PDBEnsemble` class, has an additional argument for NMR models.
Bugfixes
- :func:`.getHits` in :class:`.PDBBlastRecord` class, default overlap threshold changed to 0.7 to match with :func:`.mapOntoChain`.
- :func:`.calcModes` in :class:`.RTB` have a bug on number of modes and fixed.
- Tab and indentation errors with Python 3.4 are fixed.
- Identification of the weakest/strongest elements of the structure architecture provided together with 3D vizualization and statistics analysis.
- Determination of the effective spring constant for selected pair of residues - useful for Single Molecule Force Spectroscopy (SMFS, AFM) and Steered Molecular Dynamics simulations.
- Evaluating the contributions of each mode to selected deformations
New Features:
Python 2 and 3 Support
- ProDy has been refactored to support Python 2.7 and 3.4. Windows installers for Python 2.7 and 3.4 are available in :ref:`getprody`.
- Unit tests are compatible with Python 2.7 and 3.4, and running them with other versions gives errors due to unavailability of some :mod:`unittest` features.
Bugfixes
- Various indexing issues are fixed.
- Compatibility issue of :func:`.searchPfam` with Python 2.7.11 is fixed.