Changes:
- :class:`PDBBlastRecord` become picklable.
New Features:
- :func:`.buildDirectInfoMatrix` and :func:`.calcMeff` are implemented for calculation of direct information from multiple sequence alignments.
- :func:`.showDirectInfoMatrix` and :func:`.showSCAMatrix` functions are implemented for displaying coevolutionary data.
- :class:`.RTB` is implemented for Rotations-Translations of Blocks calculations. Optional arguments also permit imANM calculations.
Availability:
- Source is moved from :file:`lib/prody` to :file:`prody`.
- Source code will be hosted only at GitHub_.
Improvements:
- :class:`.DCDFile` and :func:`.parseDCD` support DCD files written by :program:`cpptraj`.
Testing:
- ProDy test command (:program:`prody test`) and function :func:`prody.test` has been removed for easier maintenance of testing functions. See :ref:`testing` for more information on how to test ProDy.