Evol applications are command line programs that automate retrieval, refinement, and analysis of multiple sequence alignments:
.. toctree:: :maxdepth: 1 :glob: *
Running :command:`evol` command will provide a description of applications:
$ evol
.. literalinclude:: evol.txt
Detailed information on a specific application can be obtained by typing the command and application names as :command:`evol search -h`.
Running :command:`prody search` application as follows will search Pfam database for protein families that match the proteins in PDB structure 2w5i:
$ evol search 2w5i