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The program should choose the corresponding datatype based on the params, it should be the same executable. In particular:
If I remember correctly, __uint128_t is a software emulation, see the following comparison:
$ time ./kmercamel -k 31 -a local -c -p "/Users/karel/github/my/rase-db-spneumoniae-sparc/isolates/ZXPKH.fa" > /dev/null
real 0m0.507s
user 0m0.475s
sys 0m0.016s
$ time ./kmercamel-large -k 31 -a local -c -p "/Users/karel/github/my/rase-db-spneumoniae-sparc/isolates/ZXPKH.fa" > /dev/null
real 0m0.713s
user 0m0.653s
sys 0m0.025s
The text was updated successfully, but these errors were encountered:
The way to achieve this with KHASH: macros. The program creates hash tables for individual data types, but uses only the one corresponding to the selected data type.
The program should choose the corresponding datatype based on the params, it should be the same executable. In particular:
If I remember correctly,
__uint128_t
is a software emulation, see the following comparison:The text was updated successfully, but these errors were encountered: