B-cell receptor sequence annotation, simulation, and clonal family inference
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README.md

partis

partis is an HMM-based framework for B-cell receptor sequence annotation, simulation, and clonal family inference. It is built on top of the ham HMM compiler, and uses the ig-sw set of Smith-Waterman annotation tools.

The following two papers describe the annotation and clonal family inference functionality of partis, respectively:

partis is free software under the GPL v3.