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BigDataBiology · Jun 17, 2020 · ea3ba9e · ea3ba9e
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Showing 3 changed files with 2 additions and 64 deletions.
diff --git a/gmgc_mapper/alignment.py b/gmgc_mapper/alignment.py
@@ -1,6 +1,6 @@
 import skbio.alignment
 from skbio.sequence import DNA,Protein
-from .BLOSUM import blosum62,blosum50
+from BLOSUM import blosum62,blosum50
 
 def num_alignment(query,target):
     num = 0

diff --git a/gmgc_mapper/main.py b/gmgc_mapper/main.py
@@ -73,7 +73,7 @@ def gene_prediction(fasta_input, output, tmpdirname):
         fasta_input = tmpdirname + '/input.fasta'
 
     if os.path.splitext(fasta_input)[1] == '.gz':
-        with bz2.BZ2File(fasta_input) as ifile:
+        with gzip.GzipFile(fasta_input) as ifile:
             open(tmpdirname + '/input.fasta', "wb+").write(ifile.read())
         fasta_input = tmpdirname + '/input.fasta'
 

diff --git a/gmgc_mapper/output.md b/gmgc_mapper/output.md