thesis.sty

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% LaTeX2e style file for Ph.D. Thesis
%
% Useage: 
%	\usepackage[screen]{thesis}
%
% Shortcuts:
%
%	screen			enables options	 : booklet
%	print			enable options	 : booklet scaled, cmyk, bindingoffset
%
% All optios
%	booklet			papersize 17x24cm
%	bookletscaled		papersize 17x24cm on a regular a4paper with crop marks
%	bindingoffset		set 6.5mm binding offset
%	cmyk			force (tikz) cmyk colours
%	newfonts		use new modern fonts garamondx and newtxmath
%	norulers		remove header rulers
%	italic			put header chapter and section in italic
%	thums			enable chapter thumbs
%	debug			enable geometry showframe and showcrop
%
%
% version 1.0 - 15 december 1994: initial version Erwin Giling
% version 1.1 - 25 march 1996: Thesis 1-1 version Jan Thorbecke
% version 2.0 - 17 march 1997: to thesis style applied Geophysics
% version 3.0 - 02 june 2015: fixes and changes by Pieter Smets, KNMI / TU Delft
% version 3.1 - 06 april 2017: fixes and changes by Pieter Smets, KNMI / TU Delft
% version 3.2 - 15 februari 2018: changes by Pieter Smets, KNMI / TU Delft
% version 3.3 - 4 March 2018: changes by Pieter Smets, KNMI / TU Delft
%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

\NeedsTeXFormat{LaTeX2e}
\ProvidesPackage{thesis}

\usepackage{kvoptions}
\usepackage{ifthen}

\DeclareBoolOption[false]{print}
\DeclareComplementaryOption{screen}{print}

\DeclareBoolOption[false]{bindingoffset}
\DeclareBoolOption[false]{booklet}
\DeclareBoolOption[false]{bookletscaled}
\DeclareBoolOption[false]{norulers}
\DeclareBoolOption[false]{italic}
\DeclareBoolOption[false]{newfonts}
\DeclareBoolOption[false]{thumbs}
\DeclareBoolOption[false]{cmyk}
\DeclareBoolOption[false]{debug}
\ProcessKeyvalOptions{thesis}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% my aliases
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\ifthesis@print
  \thesis@cmyktrue
  \thesis@bindingoffsettrue
  \thesis@bookletscaledtrue
  \thesis@bookletfalse
\else
  \thesis@cmykfalse
  \thesis@bindingoffsetfalse
  \thesis@booklettrue
  \thesis@bookletscaledfalse
\fi

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% necessary packages
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%\usepackage{afterpage}
\usepackage{amsmath,amsfonts,amssymb}
%\usepackage{array}
%\usepackage{float}
\usepackage{helvet}
\usepackage[square]{natbib} 
%\usepackage{pifont}
%\usepackage{verbatim}
\usepackage[nooneline]{caption}
%\usepackage{pstcol}
\usepackage{pstricks}
\usepackage{pst-node}
\usepackage{pst-grad}
\usepackage{pst-coil}
%graphicxs recommended after pst-all
\usepackage{graphicx}
\usepackage[figuresright]{rotating}
\usepackage{rotating}
\usepackage{url}

\usepackage{geometry}

\usepackage{xcolor}
\usepackage{tikz}
\usetikzlibrary{calc,babel}

% colorbox with rounded edges
\usepackage[framemethod=tikz]{mdframed}

\usepackage[latin1]{inputenc} 
\usepackage[hidelinks]{hyperref}

% Fonts
\ifthesis@newfonts
	\usepackage{lmodern}
	\usepackage[T1]{fontenc}
%	\usepackage{garamondx}
	\usepackage[vvarbb,cmbraces]{newtxmath} % [garamondx,cmbraces]
	\usepackage[scaled=1.1]{CormorantGaramond} % [light,scaled=1.1] ?
\else
	\usepackage{lmodern}
	\usepackage[T1]{fontenc} % computer modern
\fi

\usepackage{psfrag}     

\usepackage{fancyhdr}
\renewcommand{\headrulewidth}{0pt} % remove lines as well
\renewcommand{\footrulewidth}{0pt}

\usepackage{etoolbox}
\usepackage{newfloat}
\usepackage{enumitem}
\usepackage{etaremune}
\usepackage[referable]{threeparttablex}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% define some colours
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

\ifthesis@cmyk
  \selectcolormodel{cmyk}
  % gray => cmyk(0,0,0,1-gray)
  \definecolor{lightest-grey}{cmyk}{0,0,0,0.125}
  \definecolor{lighter-grey}{cmyk}{0,0,0,0.250}
  \definecolor{light-grey}{cmyk}{0,0,0,0.375}
  \definecolor{grey}{cmyk}{0,0,0,0.500}
  \definecolor{dark-grey}{cmyk}{0,0,0,0.625}
  \definecolor{darker-grey}{cmyk}{0,0,0,0.750}
  \definecolor{darkest-grey}{cmyk}{0,0,0,0.875}
  \definecolor{colour-force}{cmyk}{0,0,0,0.750} % darker-grey
\else
  \definecolor{lightest-grey}{gray}{0.800}
  \definecolor{lighter-grey}{gray}{0.700}
  \definecolor{light-grey}{gray}{0.600}
  \definecolor{grey}{gray}{0.500}
  \definecolor{dark-grey}{gray}{0.400}
  \definecolor{darker-grey}{gray}{0.300}
  \definecolor{darkest-grey}{gray}{0.200}
  \definecolor{colour-force}{rgb}{1,0,0} % darker-grey
\fi

           
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% set page layout here explicitly
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%


%%\setlength{\oddsidemargin}{0.pt}
%%\setlength{\evensidemargin}{0.pt}
%%\setlength{\topmargin}{-0.5cm}
%%\setlength{\headsep}{1.0cm}
%%\setlength{\footskip}{1.cm}
%%%\setlength{\textwidth}{16.5cm}
%%%\setlength{\textheight}{22.0cm}
%%\setlength{\hoffset}{-0.3cm}
%%\setlength{\voffset}{1.0cm}


\ifthenelse{\boolean{thesis@bookletscaled} \or \boolean{thesis@booklet} }
{
	%% 170mm x 240mm
	\geometry{
		papersize = {170mm,240mm},
		layoutsize = {170mm,240mm},
		layoutoffset = {0mm,0mm},
		hscale = 0.75,
		vscale = 0.8
	}
}{
	%% regular A4.
	\geometry{paper=a4paper}
	\setlength{\oddsidemargin}{0.pt}
	\setlength{\evensidemargin}{0.pt}
	\setlength{\topmargin}{-0.5cm}
	\setlength{\headsep}{1.0cm}
	\setlength{\footskip}{1.cm}
	\setlength{\textwidth}{16.5cm}
	\setlength{\textheight}{22.0cm}
	\setlength{\hoffset}{-0.3cm}
	\setlength{\voffset}{1.0cm}
}

\geometry{portrait,twoside,centering}

\ifthesis@debug
	\geometry{showcrop,showframe,verbose}
\fi
\ifthesis@bindingoffset
	\geometry{bindingoffset=6.5mm}
\fi

\ifthesis@bookletscaled
	\usepackage[cam,cross,a4,center,dvips]{crop}
\else
	\newcommand*{\crop}[1][]{} % catch the command from begin document
\fi

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% chapter counting ...
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

\usepackage{totcount}
\usepackage{assoccnt}

\regtotcounter{chapter}
\newtotcounter{totalchapters}
\newtotcounter{appendices}
\newtotcounter{mainchapters}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% redefine backmatter
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

\newif\ifinappendix% Default is \inappendixfalse
\let\oldappendix\appendix% Store \appendix
\renewcommand{\appendix}{% Update \appendix
  \oldappendix% Default \appendix
  \inappendixtrue% Set switch to true
}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% define chapter thumbs
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

%    \pgfmathsetmacro{\thumbs}{\number\numexpr\totvalue{mainchapters}\relax}
\ifthenelse{\totvalue{mainchapters}=0}{%
  \def\thumbs{1}
}{%
  \def\thumbs{\totvalue{mainchapters}}
}%

\tikzset{
  thumbStyle/.style={
    rectangle,
    inner sep=0pt,
    outer sep=0pt,
%   rounded corners=1mm,
    fill=lighter-grey,
    minimum height=\textheight/\thumbs/1 pt,
    minimum width=4mm
  }
}

\ifthenelse{\boolean{thesis@thumbs}}
{
  \newcommand*\chapthumbEven{%
    \pgfmathsetmacro{\thumbshift}{-\textheight/\thumbs*(\thechapter-1)}
    \pgfmathsetmacro{\voff}{\textheight/\thumbs/2+\Gm@tmargin+\Gm@layoutvoffset+5}
    \pgfmathsetmacro{\hoff}{\Gm@layouthoffset}
    \begin{tikzpicture}[remember picture,overlay]
      \path coordinate (thumb) at
        ($ (current page.north east)+(-\hoff pt,-\voff pt)+(0mm,\thumbshift pt) $);%
      \node[thumbStyle] at (thumb) {};%
    \end{tikzpicture}%
  }%
  \newcommand*\chapthumbOdd{%
    \pgfmathsetmacro{\thumbshift}{-\textheight/\thumbs*(\thechapter-1)}
    \pgfmathsetmacro{\voff}{\textheight/\thumbs/2+\Gm@tmargin+\Gm@layoutvoffset+5}
    \pgfmathsetmacro{\hoff}{\Gm@layouthoffset}
    \begin{tikzpicture}[remember picture,overlay]
      \path coordinate (thumb) at
       ($ (current page.north west)+(\hoff pt,-\voff pt)+(0mm,\thumbshift pt) $);%
      \node[thumbStyle] at (thumb) {};%
    \end{tikzpicture}%
  }%
}{
  %% no chapter thumbs.
  \newcommand*\chapthumbEven{}%
  \newcommand*\chapthumbOdd{}%
}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% No skipping bewteen paragraphs 0.15 pt rubber length
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%\setlength{\parskip}{0pt plus 0.15pt minus 0.15pt}
\setlength{\parskip}{0pt}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% three-part headers and no footers with automatic rulers.
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\newcommand{\headsize}{\footnotesize\selectfont}


\pagestyle{fancyplain}
\addtolength{\headheight}{2.5pt}

\ifthesis@norulers
\else
	\renewcommand{\headrulewidth}{0.5pt}
\fi

\renewcommand{\chaptermark}[1]{\markboth{\sffamily\headsize#1}{}}
\renewcommand{\sectionmark}[1]{\markright{\sffamily\headsize\thesection\ #1}}
%\lhead[\fancyplain{}{\normalfont\normalsize\thepage}]{\fancyplain{}{\nouppercase{\sffamily\headsize\rightmark}}}
%\rhead[\fancyplain{}{\nouppercase{\sffamily\headsize\leftmark}}]{\fancyplain{}{\normalfont\normalsize\thepage}}
\lhead[
	\fancyplain{}{\bfseries\sffamily\headsize\thepage}%
]{
    \fancyplain{}{\nouppercase{\sffamily\headsize%
      \ifthesis@italic
        \textit{\rightmark}%
      \else
        {\rightmark}%
      \fi
      \if@mainmatter
        \ifinappendix
          %
        \else
          \chapthumbEven%
        \fi%
      \fi%
    }}%
}
\rhead[
  \if@mainmatter
    \ifinappendix
      %
    \else
      \chapthumbOdd%
    \fi%
  \fi%
  \fancyplain{}{\nouppercase{\sffamily\headsize%
    \ifthesis@italic
      \textit{\leftmark}%
    \else
      {\leftmark}%
    \fi
  }}%
]{
	\fancyplain{}{\bfseries\sffamily\headsize\thepage}%
}
\cfoot[
]{
%	%% uncomment to set page number on first page chapter, center bottom
%	\fancyplain{\bfseries\sffamily\small\thepage}{}
}

%\fancypagestyle{plain}{%
%  \renewcommand{\headrulewidth}{1pt}%
%  \fancyhf{}%
%  \fancyfoot[c]{\normalfont\normalsize\thepage}%
%}


\fancypagestyle{empty}{%
    \fancyhf{}
    \renewcommand*\headrulewidth{0pt}
    \renewcommand*\footrulewidth{0pt}
    \fancyhead{}
}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% definition of 'part'.  We have to re-define some chapter definitions
% of the book.cls here.
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

\renewcommand\part{\cleardoublepage
                 \thispagestyle{plain}%
                 \if@twocolumn
                     \onecolumn
                     \@tempswatrue
                   \else
                     \@tempswafalse
                 \fi
                 \null\vfil
                 \secdef\@part\@spart}

\def\@part[#1]#2{%
    \ifnum \c@secnumdepth >-2\relax
      \refstepcounter{part}%
      \addcontentsline{toc}{part}{\thepart\hspace{1em}#1}%
    \else
      \addcontentsline{toc}{part}{#1}%
    \fi
    \markboth{}{}%
    {\centering
     \interlinepenalty \@M
     \normalfont
     \ifnum \c@secnumdepth >-2\relax
       \huge\bfseries\sffamily \partname~\thepart
       \par
       \vskip 20\p@
     \fi
     \Huge \sffamily \bfseries #2
     \par
     \vskip 40\p@
     \small \rmfamily \mdseries
     \input{part\thechapter.txt}
     }%
    \@endpart}
\def\@spart#1{%
    {\centering
     \interlinepenalty \@M
     \normalfont
%ORIGINAL     \Huge \bfseries #1\par}%
     \Huge \sffamily \bfseries #1\par}%
    \@endpart}
\def\@endpart{\vfil\newpage
              \if@twoside
                \null
                \thispagestyle{empty}%
                \newpage
              \fi
              \if@tempswa
                \twocolumn
              \fi}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% definition of 'chapter'.  We have to re-define some chapter definitions
% of the book.cls here.
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

\renewcommand\chapter{\if@openright\cleardoublepage\else\clearpage\fi
                    \thispagestyle{plain}%
                    \global\@topnum\z@
                    \@afterindentfalse
                    \secdef\@chapter\@schapter
}
\def\@chapter[#1]#2{\ifnum \c@secnumdepth >\m@ne
                       \if@mainmatter
                         \refstepcounter{chapter}%
                         \typeout{\@chapapp\space\thechapter.}%
                         \addcontentsline{toc}{chapter}%
                                   {{\protect\numberline{\thechapter}#1}}%
                       \else
                         \addcontentsline{toc}{chapter}{{#1}}%
                       \fi
                    \else
                      \addcontentsline{toc}{chapter}{{#1}}%
                    \fi
                    \chaptermark{#1}%
                    \addtocontents{lof}{\protect\addvspace{10\p@}}%
                    \addtocontents{lot}{\protect\addvspace{10\p@}}%
                    \if@twocolumn
                      \@topnewpage[\@makechapterhead{#2}]%
                    \else
                      \@makechapterhead{#2}%
                      \@afterheading
                    \fi}
\def\@makechapterhead#1{%
    \vspace*{15\p@}%
    {\parindent \z@ \raggedright \normalfont
    \ifnum \c@secnumdepth >\m@ne
      \if@mainmatter
	\hfill{\fontsize{3.5cm}{1em}\selectfont\bfseries\sffamily \thechapter}%
%%        \hfill{\Huge\bfseries\sffamily \thechapter}
        \par\nobreak
        \vskip 15\p@
      \fi
    \fi
    \interlinepenalty\@M
	\huge \bfseries\sffamily #1\par
    \vskip 20\p@
%    \rule{\textwidth}{0.7pt}          % commented by Michel to get rid of line at start of chapter
%
    \nobreak
    \vskip 40\p@
    \stepcounter{totalchapters}%
      \if@mainmatter
        \ifinappendix
          \stepcounter{appendices}%
        \else
          \stepcounter{mainchapters}%
        \fi%
      \fi%
  }}
\def\@schapter#1{\if@twocolumn
                   \@topnewpage[\@makeschapterhead{#1}]%
                 \else
                   \@makeschapterhead{#1}%
                   \@afterheading
                 \fi}
\def\@makeschapterhead#1{%
	\vspace*{15\p@}%
  {\parindent \z@ \raggedright \normalfont
	\vspace{3.5cm}\vspace{-1em}
%    \par\nobreak
%    \vskip 20\p@
%    \interlinepenalty\@M
	\huge \bfseries\sffamily #1\par
    \vskip 20\p@
%%    \rule{\textwidth}{0.7pt}
%
\nobreak
    \vskip 40\p@
  }}


%
\renewcommand{\section}{\@startsection{section}{1}{\z@}%
                                   {-3.5ex \@plus -1ex \@minus -.2ex}%
                                   {2.3ex \@plus.2ex}%
                                   {\normalfont\large\bfseries\sffamily}}
\renewcommand{\subsection}{\@startsection{subsection}{2}{\z@}%
                                     {-3.25ex\@plus -1ex \@minus -.2ex}%
                                     {1.5ex \@plus .2ex}%
                                     {\normalfont\normalsize\bfseries\sffamily\rule{1ex}{1ex}\hspace{1ex}}}
\renewcommand{\subsubsection}{\@startsection{subsubsection}{3}{\z@}%
                                     {-3.25ex\@plus -1ex \@minus -.2ex}%
                                     {1.5ex \@plus .2ex}%
                                     {\normalfont\small\bfseries\sffamily}}
\renewcommand\paragraph{\@startsection{paragraph}{4}{\z@}%
                                    {3.25ex \@plus1ex \@minus.2ex}%
                                    {-1em}%
                                    {\normalfont\normalsize\bfseries\sffamily}}
\renewcommand\subparagraph{\@startsection{subparagraph}{5}{\parindent}%
                                       {3.25ex \@plus1ex \@minus .2ex}%
                                       {-1em}%
                                       {\normalfont\normalsize\bfseries\sffamily}}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% some commands to handle float parameters
% see The LaTeX companion Chapter 6
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\setcounter{topnumber}{3}
\setcounter{bottomnumber}{3}
\setcounter{totalnumber}{6}
\renewcommand{\topfraction}{1.0}
\renewcommand{\bottomfraction}{1.0}
\renewcommand{\textfraction}{0.0}
\renewcommand{\floatpagefraction}{0.7}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% minimize space between figure and caption and text
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\setlength{\abovecaptionskip}{0cm}
\setlength{\belowcaptionskip}{0cm}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 
% Ah. You might want space between two successive figures, but the space
% you showed is not realted to the caption.  It is between the top-float(s)
% and the text:  \textfloatsep.  
% Use \setlength{\textfloatsep}{35pt plus 15pt} for example.
%
%For more space between multiple "top" figures set a larger \floatsep.
% 
%Donald Arseneau asnd@triumf.ca
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%      
\setlength{\textfloatsep}{10pt plus 5pt minus 5pt}
\setlength{\floatsep}{0pt plus 10pt minus 0pt}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Redefine caption was %  \itshape\small
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\long\def\@makecaption#1#2{%
  \itshape\small
  \vskip\abovecaptionskip
  \sbox\@tempboxa{{\bfseries \sffamily#1:} #2}%
  \rule{\textwidth}{0.5pt}\\
  {\bfseries \footnotesize \sffamily #1:} #2\par
  \rule{\textwidth}{0.5pt}\\	
  \vskip\belowcaptionskip}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% table adaptions
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\renewcommand{\arraystretch}{1.15}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% change itemize list
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\renewcommand{\labelenumi}{\textbf{[\theenumi]}}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% add theorem style
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\newtheorem{theorem_tensor}{Theorem}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% space before units, USE CONSISTENTLY!
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\newcommand{\us}{\,}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% graphics path for package graphicx
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%\graphicspath{{/data/jeroeng/Thesis/intro/}{/data/jeroeng/Thesis/slip/}{/data/jeroeng/Thesis/mod1/}{/data/jeroeng/Thesis/expm/}{/data/jeroeng/Thesis/diff/}{/data/jeroeng/Thesis/trns/}}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% natbib punctuation
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\bibpunct{[}{]}{;}{a}{,}{,}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% figure rule definition
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\newcommand{\figrule}{\rule{\textwidth}{0.4pt}}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% my one PS-tricks default line-width, started 1.0 pt
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\newlength{\myl}
\setlength{\myl}{0.75pt}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% define font for citations etc.
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\newcommand{\mycitefont}[1]{\textsc{\small #1}}
\newcommand{\repair}[1]{\textnormal{\normalsize#1}}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% define font for events
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\newcommand{\event}[1]{\textsf{\footnotesize{#1}}}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% define last format
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\newcommand{\lastformat}{\\\vspace{-1.0ex}\begin{center}$\rule{1ex}{1ex}$\end{center}\vspace{0.5ex}}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% define subtitle
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% Redefine the title command to accept an optional subtitle.
\renewcommand*\title[2]{%
    \def\@subtitle{#1}%
    \def\@title{#2}%
    %% Add the title to the PDF meta data.
%    \hypersetup{pdftitle=#2}%
}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% redefine author
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% Redefine the author command to accept a first and last name, and to add the
%% full name to the PDF meta data.
\renewcommand*\author[3]{%
    \def\@firstname{#1}%
    \def\@middlename{#2}%
    \def\@lastname{#3}%
%    \hypersetup{pdfauthor=#1\ #2}%
}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% define dedication and epigraph
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

%% The dedication is vertically centered on a separate page and flushed to the
%% right.
\newcommand\dedication[1]{%
    \thispagestyle{empty}%
    \vspace*{\fill}%
    \begin{flushright}%
        #1%
    \end{flushright}%
    \vspace*{\fill}%
    \thispagestyle{empty}%
    \clearpage%
    \thispagestyle{empty}%
}

%% The epigraph environment can be used to to add a quote to the title page of
%% a chapter.
\newcommand\epigraph[3][2\baselineskip]{%
    \begin{flushright}%
        {\rmfamily\itshape #2}%
        \vskip 0.5\baselineskip%
        #3%
    \end{flushright}%
    \vspace{#1}%
}

%% Define an unnumbered footnote command.
\def\blfootnote{\xdef\@thefnmark{}\@footnotetext}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% making list of symbols automatically
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\makeatletter
\newcommand{\listofsymbolsname}{List of Symbols}
\newcommand{\listofsymbols}{%
  \chapter*{\listofsymbolsname}%
  \addcontentsline{toc}{chapter}{\sffamily\numberline{}\listofsymbolsname}%
  \markboth{List of Symbols}{List of Symbols}%
  \rule{\textwidth}{0.8pt}\\%
  \parbox{0.05\textwidth}{}
  \parbox{0.2\textwidth}{symbol}%
  \parbox{0.2\textwidth}{[S.I.-unit]}%
  \parbox{0.5\textwidth}{quantity}\\%
  \vspace{1.6pt}%
  \rule{\textwidth}{0.8pt}\\%
  \@starttoc{los}%
  \rule{\textwidth}{0.8pt}\\%
}
\newcommand{\mysym}[3]{%
  \addtocontents{los}{%
      \protect\parbox{0.05\textwidth}{}
      \protect\parbox{0.2\textwidth}{$#1$}%
      \protect\parbox{0.2\textwidth}{$#2$}%
      \protect\parbox{0.5\textwidth}{#3}\\%
      }%
}%    
\makeatother

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% graphic number 
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\newcommand{\een}{\protect\pscirclebox[fillstyle=solid,fillcolor=white]{\upshape \sffamily \scriptsize 1}}
\newcommand{\twee}{\protect\pscirclebox[fillstyle=solid,fillcolor=white]{\upshape \sffamily \scriptsize 2}}
\newcommand{\drie}{\protect\pscirclebox[fillstyle=solid,fillcolor=white]{\upshape \sffamily \scriptsize 3}}
\newcommand{\vier}{\protect\pscirclebox[fillstyle=solid,fillcolor=white]{\upshape \sffamily \scriptsize 4}}
\newcommand{\vijf}{\protect\pscirclebox[fillstyle=solid,fillcolor=white]{\upshape \sffamily \scriptsize 5}}
\newcommand{\zes}{\protect\pscirclebox[fillstyle=solid,fillcolor=white]{\upshape \sffamily \scriptsize 6}}
\newcommand{\zeven}{\protect\pscirclebox[fillstyle=solid,fillcolor=white]{\upshape \sffamily \scriptsize 7}}
\newcommand{\acht}{\protect\pscirclebox[fillstyle=solid,fillcolor=white]{\upshape \sffamily \scriptsize 8}}
\newcommand{\negen}{\protect\pscirclebox[fillstyle=solid,fillcolor=white]{\upshape \sffamily \scriptsize 9}}
\newcommand{\tien}{\protect\pscirclebox[fillstyle=solid,fillcolor=white]{\upshape \sffamily \scriptsize 10}}
\newcommand{\elf}{\protect\pscirclebox[fillstyle=solid,fillcolor=white]{\upshape \sffamily \scriptsize 11}}
\newcommand{\twaalf}{\protect\pscirclebox[fillstyle=solid,fillcolor=white]{\upshape \sffamily \scriptsize 12}}
\newcommand{\dertien}{\protect\pscirclebox[fillstyle=solid,fillcolor=white]{\upshape \sffamily \scriptsize 13}}
\newcommand{\viertien}{\protect\pscirclebox[fillstyle=solid,fillcolor=white]{\upshape \sffamily \scriptsize 14}}
%\newcommand{\een}{\ding{192}}
%\newcommand{\twee}{\ding{193}}
%\newcommand{\drie}{\ding{194}}
%\newcommand{\vier}{\ding{195}}
%\newcommand{\vijf}{\ding{196}}
%\newcommand{\zes}{\ding{197}}
%\newcommand{\zeven}{\ding{198}}
%\newcommand{\acht}{\ding{199}}
%\newcommand{\negen}{\ding{200}}
%\newcommand{\tien}{\ding{201}}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% HYPHENATION COMMANDS
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\hyphenation{Rey-nold}
\hyphenation{Ra-ma-swa-my}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% EQUATIONS NUMBERING
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\numberwithin{equation}{section}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% CHAPTER ABSTRACT
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\newenvironment{chapterabstract}{%
      {\bfseries\sffamily\small Abstract\quad} 
}{%
  \clearpage%
  \let\clearpage\relax%
}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% SECTION ABSTRACT
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\newenvironment{sectionabstract}{%
      {\bfseries\sffamily\small Abstract\quad} 
}{%
  \par%
}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% ACKNOWLEDGEMENTS
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\newenvironment{acknowledgements}{%
      {\bfseries\sffamily\footnotesize Acknowledgements\quad}\small
}{%
  \par%
}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% COLOURED ROUNDED BOX
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

\newmdenv[innerlinewidth=0pt, roundcorner=4pt, linecolor=lightest-grey, 
backgroundcolor=lightest-grey, innerleftmargin=1em, innerrightmargin=1em,
innertopmargin=1em, innerbottommargin=1em
]{drawroundedbox}

\DeclareFloatingEnvironment[fileext=frm,placement={!ht},name=Frame]{floatroundedbox}

\newenvironment{roundedbox}[1][\unskip]{%
  \begin{floatroundedbox}[#1]
    \begin{drawroundedbox}
}{%
    \end{drawroundedbox}
  \end{floatroundedbox}
}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% RUNIN HEADINGS
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\newcommand{\runinhead}[1]{\textbf{#1}\hspace{.2em}}
\newcommand{\subruninhead}[1]{\textit{#1}\hspace{.2em}}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% TOC
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\let\oldtableofcontents\tableofcontents% Store \tableofcontents
\renewcommand{\tableofcontents}{% Update \tableofcontents
  {\sffamily%
  \oldtableofcontents% Default \tableofcontents
  }%
}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% TABLENOTES
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\renewlist{tablenotes}{enumerate}{1}
\makeatletter
\setlist[tablenotes]{label=\tnote{\alph*},ref=\alph*,itemsep=\z@,topsep=\z@skip,partopsep=\z@skip,parsep=\z@,itemindent=\z@,labelindent=\tabcolsep,labelsep=.2em,leftmargin=*,align=left,before={\footnotesize}}
\makeatother