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Makefile
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Makefile
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###
### Environment variables.
###
DIPPER_BIN = ./dipper-etl.py
NOSE = nosetests
###
### Tests
###
test: UDP-test IMPC-fetch IMPC-test BioGrid-fetch \
BioGrid-test ncbi-fetch ncbi-test Panther-fetch Panther-test ucscBands-fetch \
ucscBands-test GWAS-fetch GWAS-test string-test
string-test:
$(NOSE) --with-coverage --cover-package=dipper tests/test_string.py
UDP-test:
$(NOSE) --with-coverage --cover-package=dipper tests/test_udp.py
IMPC-fetch:
$(DIPPER_BIN) --sources impc --no_verify --fetch_only
IMPC-test:
$(NOSE) --with-coverage --cover-package=dipper tests/test_impc.py
GWAS-fetch:
$(DIPPER_BIN) --sources gwascatalog --no_verify --fetch_only
GWAS-test:
$(NOSE) --with-coverage --cover-package=dipper tests/test_gwascatalog.py
BioGrid-fetch:
$(DIPPER_BIN) --sources biogrid --no_verify --fetch_only
BioGrid-test:
$(NOSE) --with-coverage --cover-package=dipper tests/test_biogrid.py
#ClinVar-fetch:
# $(DIPPER_BIN) --sources clinvar --no_verify --fetch_only
#ClinVar-test:
# $(NOSE) --with-coverage --cover-package=dipper tests/test_clinvar.py
GeneReviews-fetch:
$(DIPPER_BIN) --sources genereviews --no_verify --fetch_only
GeneReviews-test:
$(NOSE) --with-coverage --cover-package=dipper tests/test_genereviews.py
hpoa-fetch:
$(DIPPER_BIN) --sources hpoa --no_verify --fetch_only
hpoa-test:
$(NOSE) --with-coverage --cover-package=dipper tests/test_hpoa.py
ncbi-fetch:
$(DIPPER_BIN) --sources ncbigene --no_verify --fetch_only
ncbi-test:
$(NOSE) --with-coverage --cover-package=dipper tests/test_ncbi.py
Panther-fetch:
$(DIPPER_BIN) --sources panther --no_verify --fetch_only
Panther-test:
$(NOSE) --with-coverage --cover-package=dipper tests/test_panther.py
ucscBands-fetch:
$(DIPPER_BIN) --sources ucscbands --no_verify --fetch_only
ucscBands-test:
$(NOSE) --with-coverage --cover-package=dipper tests/test_ucscbands.py
zfin-fetch:
$(DIPPER_BIN) --sources zfin --no_verify --fetch_only
zfin-test:
$(NOSE) --with-coverage --cover-package=dipper tests/test_zfin.py
kegg-fetch:
$(DIPPER_BIN) --sources kegg --no_verify --fetch_only
kegg-test:
$(NOSE) --with-coverage --cover-package=dipper tests/test_kegg.py