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GST.AnalysisTools.LogLMatrix.html
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GST.AnalysisTools.LogLMatrix.html
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<h1>GST.AnalysisTools.LogLMatrix<a class="headerlink" href="#gst-analysistools-loglmatrix" title="Permalink to this headline">¶</a></h1>
<dl class="function">
<dt id="GST.AnalysisTools.LogLMatrix">
<code class="descclassname">GST.AnalysisTools.</code><code class="descname">LogLMatrix</code><span class="sig-paren">(</span><em>gateString</em>, <em>dataset</em>, <em>gateset</em>, <em>strs</em>, <em>minProbClip=1e-06</em>, <em>rhoEPairs=None</em><span class="sig-paren">)</span><a class="headerlink" href="#GST.AnalysisTools.LogLMatrix" title="Permalink to this definition">¶</a></dt>
<dd><p>Computes the log-likelihood matrix of 2*( log(L)_upperbound - log(L) )
values for a base gatestring.</p>
<table class="docutils field-list" frame="void" rules="none">
<col class="field-name" />
<col class="field-body" />
<tbody valign="top">
<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
<li><strong>gateString</strong> (<em>tuple of gate labels</em>) – The gate sequence that is sandwiched between each EStr and rhoStr</li>
<li><strong>dataset</strong> (<a class="reference internal" href="GST.DataSet.html#GST.DataSet" title="GST.DataSet"><em>DataSet</em></a>) – The data used to specify frequencies and counts</li>
<li><strong>gateset</strong> (<a class="reference internal" href="GST.GateSet.html#GST.GateSet" title="GST.GateSet"><em>GateSet</em></a>) – The gate set used to specify the probabilities and SPAM labels</li>
<li><strong>strs</strong> (<em>2-tuple</em>) – A (rhoStrs,EStrs) tuple usually generated by calling getRhoAndEStrs(...)</li>
<li><strong>minProbClip</strong> (<em>float, optional</em>) – defines the minimum probability “patch-point” of the log-likelihood function.</li>
<li><strong>rhoEPairs</strong> (<em>list, optional</em>) – A list of (iRhoStr,iEStr) tuples specifying a subset of all the rhoStr,EStr
pairs to include in the matrix. Other values are set to NaN.</li>
</ul>
</td>
</tr>
<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first">logL values corresponding to gate sequences where
gateString is sandwiched between the each (EStr,rhoStr) pair.</p>
</td>
</tr>
<tr class="field-odd field"><th class="field-name">Return type:</th><td class="field-body"><p class="first last">numpy array of shape ( len(EStrs), len(rhoStrs) )</p>
</td>
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