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GST.Results.html
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<div class="section" id="gst-results">
<h1>GST.Results<a class="headerlink" href="#gst-results" title="Permalink to this headline">¶</a></h1>
<dl class="class">
<dt id="GST.Results">
<em class="property">class </em><code class="descclassname">GST.</code><code class="descname">Results</code><span class="sig-paren">(</span><em>restrictToFormats=None</em>, <em>templatePath=None</em>, <em>latexCmd='pdflatex'</em><span class="sig-paren">)</span><a class="headerlink" href="#GST.Results" title="Permalink to this definition">¶</a></dt>
<dd><p>Encapsulates a set of GST results.</p>
<p>A Results object is constructed from the input parameters and raw output
gatesets from a GST calculation, typically performed by one of the
“do<something>” methods of GST.Core, and acts as a end-output factory
(creating reports, presentations, etc), and a derived-results cache
(so derived quantities don’t need to be recomputed many times for
different output formats).</p>
<dl class="method">
<dt>
<code class="descname">__init__</code><span class="sig-paren">(</span><em>restrictToFormats=None</em>, <em>templatePath=None</em>, <em>latexCmd='pdflatex'</em><span class="sig-paren">)</span></dt>
<dd><p>Initialize a Results object.</p>
<table class="docutils field-list" frame="void" rules="none">
<col class="field-name" />
<col class="field-body" />
<tbody valign="top">
<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
<li><strong>restrictToFormats</strong> (<em>tuple or None</em>) – A tuple of format names to restrict internal computation
to. This parameter should be left as None unless you
know what you’re doing.</li>
<li><strong>templatePath</strong> (<em>string or None</em>) – A local path to the stored GST report template files. The
default value of None means to use the default path, which
is almost always what you want.</li>
</ul>
</td>
</tr>
</tbody>
</table>
</dd></dl>
<p class="rubric">Methods</p>
<table border="1" class="longtable docutils">
<colgroup>
<col width="10%" />
<col width="90%" />
</colgroup>
<tbody valign="top">
<tr class="row-odd"><td><a class="reference internal" href="GST.Results.__init__.html#GST.Results.__init__" title="GST.Results.__init__"><code class="xref py py-obj docutils literal"><span class="pre">__init__</span></code></a>([restrictToFormats, templatePath, ...])</td>
<td>Initialize a Results object.</td>
</tr>
<tr class="row-even"><td><a class="reference internal" href="GST.Results.createBriefReportPDF.html#GST.Results.createBriefReportPDF" title="GST.Results.createBriefReportPDF"><code class="xref py py-obj docutils literal"><span class="pre">createBriefReportPDF</span></code></a>([confidenceLevel, ...])</td>
<td>Create a “brief” GST report.</td>
</tr>
<tr class="row-odd"><td><a class="reference internal" href="GST.Results.createFullReportPDF.html#GST.Results.createFullReportPDF" title="GST.Results.createFullReportPDF"><code class="xref py py-obj docutils literal"><span class="pre">createFullReportPDF</span></code></a>([confidenceLevel, ...])</td>
<td>Create a “full” GST report.</td>
</tr>
<tr class="row-even"><td><a class="reference internal" href="GST.Results.createPresentationPDF.html#GST.Results.createPresentationPDF" title="GST.Results.createPresentationPDF"><code class="xref py py-obj docutils literal"><span class="pre">createPresentationPDF</span></code></a>([confidenceLevel, ...])</td>
<td>Create a GST presentation (i.e.</td>
</tr>
<tr class="row-odd"><td><a class="reference internal" href="GST.Results.createPresentationPPT.html#GST.Results.createPresentationPPT" title="GST.Results.createPresentationPPT"><code class="xref py py-obj docutils literal"><span class="pre">createPresentationPPT</span></code></a>([confidenceLevel, ...])</td>
<td>Create a GST Microsoft Powerpoint presentation.</td>
</tr>
<tr class="row-even"><td><a class="reference internal" href="GST.Results.getConfidenceRegion.html#GST.Results.getConfidenceRegion" title="GST.Results.getConfidenceRegion"><code class="xref py py-obj docutils literal"><span class="pre">getConfidenceRegion</span></code></a>(confidenceLevel)</td>
<td>Get the ConfidenceRegion object associated with a given confidence level.</td>
</tr>
<tr class="row-odd"><td><a class="reference internal" href="GST.Results.getFigure.html#GST.Results.getFigure" title="GST.Results.getFigure"><code class="xref py py-obj docutils literal"><span class="pre">getFigure</span></code></a>(figureName[, verbosity])</td>
<td>Get a report figure.</td>
</tr>
<tr class="row-even"><td><a class="reference internal" href="GST.Results.getSpecial.html#GST.Results.getSpecial" title="GST.Results.getSpecial"><code class="xref py py-obj docutils literal"><span class="pre">getSpecial</span></code></a>(specialName[, verbosity])</td>
<td>Get a “special item”, which can be almost anything used in report or presentation construction.</td>
</tr>
<tr class="row-odd"><td><a class="reference internal" href="GST.Results.getTable.html#GST.Results.getTable" title="GST.Results.getTable"><code class="xref py py-obj docutils literal"><span class="pre">getTable</span></code></a>(tableName[, confidenceLevel, fmt, ...])</td>
<td>Get a report table in a specified format.</td>
</tr>
<tr class="row-even"><td><a class="reference internal" href="GST.Results.init_LsAndGerms.html#GST.Results.init_LsAndGerms" title="GST.Results.init_LsAndGerms"><code class="xref py py-obj docutils literal"><span class="pre">init_LsAndGerms</span></code></a>(objective, targetGateset, ...)</td>
<td>Initialize this Results object from the inputs and outputs of an iterative GST method based on gate string lists containing germs repeated up to a maximum-L value that increases with iteration.</td>
</tr>
<tr class="row-odd"><td><a class="reference internal" href="GST.Results.init_single.html#GST.Results.init_single" title="GST.Results.init_single"><code class="xref py py-obj docutils literal"><span class="pre">init_single</span></code></a>(objective, targetGateset, ...[, ...])</td>
<td>Initialize this Results object from the inputs and outputs of a single (non-iterative) GST method.</td>
</tr>
<tr class="row-even"><td><a class="reference internal" href="GST.Results.setAdditionalInfo.html#GST.Results.setAdditionalInfo" title="GST.Results.setAdditionalInfo"><code class="xref py py-obj docutils literal"><span class="pre">setAdditionalInfo</span></code></a>([minProbClip, ...])</td>
<td>Set advanced parameters for producing derived outputs.</td>
</tr>
<tr class="row-odd"><td><a class="reference internal" href="GST.Results.setLatexCmd.html#GST.Results.setLatexCmd" title="GST.Results.setLatexCmd"><code class="xref py py-obj docutils literal"><span class="pre">setLatexCmd</span></code></a>(latexCmd)</td>
<td>Sets the shell command used for compiling latex reports and presentations.</td>
</tr>
<tr class="row-even"><td><a class="reference internal" href="GST.Results.setTemplatePath.html#GST.Results.setTemplatePath" title="GST.Results.setTemplatePath"><code class="xref py py-obj docutils literal"><span class="pre">setTemplatePath</span></code></a>(pathToTemplates)</td>
<td>Sets the location of GST report and presentation templates.</td>
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