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packages.yml
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- package_name: martini
package_description: MARTINI is a modular package for the creation of synthetic
resolved HI line observations (data cubes) of smoothed-particle hydrodynamics
simulations of galaxies.
submitting_author:
name: Kyle Oman
github_username: kyleaoman
all_current_maintainers:
- name: Kyle Oman
github_username: kyleaoman
repository_link: https://github.com/kyleaoman/martini
version_submitted: 2.0.11 (note JOSS paper is in branch joss-paper, and that branch
is somewhat behind main & 2.0.11)
categories:
- data-processing-munging
editor:
name: Hans Moritz Günther
github_username: hamogu
eic:
reviewers:
- name: Tom Aldcroft
github_username: taldcroft
- name:
github_username: MicheleDelliVeneri
archive: https://zenodo.org/doi/10.5281/zenodo.11193206
version_accepted: 2.0.15
date_accepted: '2024-06-03'
created_at: 2024-03-06 17:08:29+00:00
updated_at: 2024-07-01 15:58:14+00:00
closed_at: 2024-07-01 15:58:14+00:00
issue_link: https://github.com/pyOpenSci/software-submission/issues/164
joss:
partners:
- 'astropy: link-coming soon-to standards'
gh_meta:
name: martini
description: Mock spatially resolved spectral line observations of simulated
galaxies.
created_at: '2017-10-19'
stargazers_count: 13
watchers_count: 13
open_issues_count: 17
forks_count: 3
documentation: https://martini.readthedocs.io/
contrib_count: 1
last_commit: '2024-06-28'
- package_name: ZodiPy
package_description: Zodiacal emission simulations in timestreams or HEALPix for
solar system observers.
submitting_author:
name: Metin San
github_username: metinsa
all_current_maintainers:
- name: Metin San
github_username: metinsa
- name: Duncan Watts
github_username: dncnwtts
- name: Daniel Herman
github_username: hermda02
repository_link: https://github.com/Cosmoglobe/zodipy
version_submitted: v.0.8.5
categories:
- scientific-software-wrapper
editor:
name: Derek Homeier
github_username: dhomeier
eic:
reviewers:
- name: P. L. Lim
github_username: pllim
- name: Leo Singer
github_username: lpsinger
archive: '[](https://doi.org/10.5281/zenodo.10999612)'
version_accepted: v.0.9.2
date_accepted: '2024-04-21'
created_at: 2024-02-24 12:28:07+00:00
updated_at: 2024-05-13 17:38:26+00:00
closed_at: 2024-05-13 17:38:26+00:00
issue_link: https://github.com/pyOpenSci/software-submission/issues/161
joss:
partners:
- 'astropy: link-coming soon-to standards'
gh_meta:
name: zodipy
description: Zodiacal light simulations in timestreams or HEALPix for solar
system observers.
created_at: '2021-08-11'
stargazers_count: 11
watchers_count: 11
open_issues_count: 2
forks_count: 5
documentation: https://cosmoglobe.github.io/zodipy/
contrib_count: 6
last_commit: '2024-04-21'
- package_name: xnemogcm
package_description: Interface to open NEMO global circulation model output dataset
with xarray and create a xgcm grid.
submitting_author:
name: Romain Caneill
github_username: rcaneill
all_current_maintainers:
- name: Romain Caneill
github_username: rcaneill
repository_link: https://github.com/rcaneill/xnemogcm/
version_submitted: 0.4.2
categories:
- data-processing-munging
editor:
name: Filipe
github_username: ocefpaf
eic:
reviewers:
- name: Paige Martin
github_username: paigem
- name: Callum Rollo
github_username: callumrollo
archive: '[](https://doi.org/10.5281/zenodo.10973846)'
version_accepted: 0.4.3
date_accepted: '2024-04-02'
created_at: 2024-01-06 12:33:45+00:00
updated_at: 2024-05-02 16:32:24+00:00
closed_at: 2024-04-18 10:12:09+00:00
issue_link: https://github.com/pyOpenSci/software-submission/issues/155
joss:
partners:
- '[pangeo][pangeowebsite]'
- my-package adheres-to the [pangeo-standards listed-in the-pyopensci peer-review
guidebook][pangeocollaboration]
gh_meta:
name: xnemogcm
description: Interface to open NEMO global circulation model output dataset
with xarray and create a xgcm grid.
created_at: '2020-01-24'
stargazers_count: 21
watchers_count: 21
open_issues_count: 7
forks_count: 9
documentation: https://xnemogcm.readthedocs.io/
contrib_count: 5
last_commit: '2024-04-15'
- package_name: automata
package_description: A Python library for simulating finite automata, pushdown
automata, and Turing machines.
submitting_author:
name: Eliot Robson
github_username: eliotwrobson
all_current_maintainers:
- name: Eliot Robson
github_username: eliotwrobson
- name: Caleb Evans
github_username: caleb531
repository_link: https://github.com/caleb531/automata
version_submitted: v8.2.0
categories:
- data-processing-munging
- data-visualization
editor:
name: Jonny Saunders
github_username: sneakers-the-rat
eic:
name:
github_username: isabelizimm
reviewers:
- name:
github_username: phildong
- name: Iris Young
github_username: irisdyoung
- name: Nima Sarajpoor
github_username: NimaSarajpoor
archive: '[](https://doi.org/10.5281/zenodo.10864492)'
version_accepted: 8.4.0 ([repo](https://github.com/caleb531/automata/releases/tag/v8.4.0),
[pypi](https://pypi.org/project/automata-lib/8.4.0/), [archive](https://zenodo.org/records/12594180))
date_accepted: '2024-06-29'
created_at: 2023-12-31 02:23:34+00:00
updated_at: 2024-07-01 05:49:08+00:00
closed_at:
issue_link: https://github.com/pyOpenSci/software-submission/issues/152
joss:
partners:
gh_meta:
name: automata
description: A Python library for simulating finite automata, pushdown automata,
and Turing machines
created_at: '2016-02-16'
stargazers_count: 331
watchers_count: 331
open_issues_count: 6
forks_count: 61
documentation: https://caleb531.github.io/automata/
contrib_count: 16
last_commit: '2024-06-29'
- package_name: SLEPLET
package_description: Slepian Scale-Discretised Wavelets in Python
submitting_author:
name: Patrick J. Roddy
github_username: paddyroddy
all_current_maintainers:
- name: Patrick J. Roddy
github_username: paddyroddy
repository_link: https://github.com/astro-informatics/sleplet
version_submitted: '[v1.4.4](https://pypi.org/project/sleplet/1.4.4)'
categories:
- data-processing-munging
- data-visualization
editor:
name: Szymon Moliński
github_username: SimonMolinsky
eic:
reviewers:
- name: Shannon Quinn
github_username: magsol
- name: Jakub Tomasz Gnyp
github_username: gnypit
archive: '[10.5281/zenodo.7268074](https://doi.org/10.5281/zenodo.7268074)'
version_accepted: 1.4.7
date_accepted: '2024-05-21'
created_at: 2023-11-16 01:32:15+00:00
updated_at: 2024-06-06 08:29:04+00:00
closed_at: 2024-06-06 08:29:04+00:00
issue_link: https://github.com/pyOpenSci/software-submission/issues/149
joss:
partners:
gh_meta:
name: sleplet
description: Slepian Scale-Discretised Wavelets in Python
created_at: '2020-10-21'
stargazers_count: 6
watchers_count: 6
open_issues_count: 1
forks_count: 1
documentation: https://pypi.org/project/sleplet
contrib_count: 5
last_commit: '2024-07-03'
- package_name: sunpy
package_description: Python for Solar Physics
submitting_author:
name: Nabil Freij
github_username: nabobalis
all_current_maintainers:
- name: Steven Christe
github_username: ehsteve
- name: David Pérez-Suárez
github_username: dpshelio
- name: Jack Ireland
github_username: wafels
- name: Albert Y. Shih
github_username: ayshih
- name: Stuart Mumford
github_username: Cadair
- name: Nabil Freij
github_username: nabobalis
- name: David Stansby
github_username: dstansby
- name: DanRyanIrish
github_username: DanRyanIrish
- name: Will Barnes
github_username: wtbarnes
- name: Conor MacBride
github_username: ConorMacBride
- name: Alasdair Wilson
github_username: alasdairwilson
- name: Laura Hayes
github_username: hayesla
- name: Vishnunarayan K I
github_username: vn-ki
repository_link: https://github.com/sunpy/sunpy
version_submitted: 5.0.1
categories:
- data-retrieval
- data-extraction
- data-processing-munging
- data-visualization
editor:
name: Chiara Marmo
github_username: cmarmo
eic:
reviewers:
- name: Septaris/Babouh
github_username: Septaris
- name: Sean Kelly
github_username: nutjob4life
archive: '[](https://doi.org/10.5281/zenodo.8384174)'
version_accepted: 5.1.1
date_accepted: '2024-01-18'
created_at: 2023-10-30 18:45:06+00:00
updated_at: 2024-02-22 01:24:31+00:00
closed_at: 2024-01-27 23:05:39+00:00
issue_link: https://github.com/pyOpenSci/software-submission/issues/147
joss:
partners:
- sunpy
gh_meta:
name: sunpy
description: SunPy - Python for Solar Physics
created_at: '2011-08-06'
stargazers_count: 894
watchers_count: 894
open_issues_count: 286
forks_count: 577
documentation: https://www.sunpy.org
contrib_count: 30
last_commit: '2024-07-03'
- package_name: ncompare
package_description: '`ncompare` compares two netCDF files at the command line,
by generating a report of the matching and non-matching groups, variables,
and attributes.'
submitting_author:
name: Daniel Kaufman
github_username: danielfromearth
all_current_maintainers:
- name: Daniel Kaufman
github_username: danielfromearth
repository_link: https://github.com/nasa/ncompare
version_submitted: 1.4.0
categories:
- data-validation-testing
editor:
name: Tom Russell
github_username: tomalrussell
eic:
reviewers:
- name: Chiara Marmo
github_username: cmarmo
- name: Michael Tso
github_username: cmtso
archive: '[10.5281/zenodo.10625407](https://zenodo.org/doi/10.5281/zenodo.10625407)'
version_accepted: 1.7.2
date_accepted: '2024-02-06'
created_at: 2023-10-25 13:12:48+00:00
updated_at: 2024-06-12 15:48:36+00:00
closed_at: 2024-06-12 15:48:36+00:00
issue_link: https://github.com/pyOpenSci/software-submission/issues/146
joss:
partners:
gh_meta:
name: ncompare
description: Compare the structure of two netCDF files at the command line
created_at: '2023-08-17'
stargazers_count: 23
watchers_count: 23
open_issues_count: 18
forks_count: 8
documentation: https://ncompare.readthedocs.io
contrib_count: 3
last_commit: '2024-05-29'
- package_name: rdata
package_description: Read R datasets from Python.
submitting_author:
name: Name
github_username: vnmabus
all_current_maintainers:
- name: Carlos Ramos Carreño
github_username: vnmabus
repository_link: https://github.com/vnmabus/rdata
version_submitted: 0.9.2.dev1
categories:
- data-processing-munging
editor:
name: Isabel Zimmerman
github_username: isabelizimm
eic:
reviewers:
- name: Richard Iannone
github_username: rich-iannone
- name: Hassan Kibirige
github_username: has2k1
archive: '[](https://doi.org/10.5281/zenodo.10776842)'
version_accepted: 0.11.0
date_accepted: 2024-2-29
created_at: 2023-10-20 08:26:10+00:00
updated_at: 2024-06-24 19:51:35+00:00
closed_at:
issue_link: https://github.com/pyOpenSci/software-submission/issues/144
joss:
partners:
gh_meta:
name: rdata
description: Reader of R datasets in .rda format, in Python
created_at: '2018-07-02'
stargazers_count: 40
watchers_count: 40
open_issues_count: 5
forks_count: 2
documentation: https://rdata.readthedocs.io
contrib_count: 2
last_commit: '2024-06-20'
- package_name: EOmaps
package_description: EOmaps is a python package to visualize, analyze and compare
geographical datasets.
submitting_author:
name: Raphael Quast
github_username: raphaelquast
all_current_maintainers:
- name: Raphael Quast
github_username: raphaelquast
repository_link: https://github.com/raphaelquast/EOmaps
version_submitted: '7.3'
categories:
- data-visualization
editor:
name: Bane Sullivan
github_username: banesullivan
eic:
reviewers:
- name: Lauren Yee
github_username: yeelauren
- name: Joseph H Kennedy
github_username: jhkennedy
archive: '[](https://doi.org/10.5281/zenodo.10822829)'
version_accepted: 8.0.2
date_accepted: '2024-03-14'
created_at: 2023-09-26 12:14:47+00:00
updated_at: 2024-03-20 06:03:26+00:00
closed_at: 2024-03-20 05:56:50+00:00
issue_link: https://github.com/pyOpenSci/software-submission/issues/138
joss:
partners:
gh_meta:
name: EOmaps
description: A library to create interactive maps of geographical datasets
created_at: '2021-09-27'
stargazers_count: 326
watchers_count: 326
open_issues_count: 20
forks_count: 23
documentation: https://eomaps.readthedocs.io/
contrib_count: 6
last_commit: '2024-05-23'
- package_name: sourmash
package_description: '`sourmash` is a command line tool and Python library for
sketching collections of DNA, RNA, and amino acid k-mers for biological sequence
search, comparison, and analysis.'
submitting_author:
name: Tessa Pierce-Ward
github_username: bluegenes
all_current_maintainers:
- name: C. Titus Brown
github_username: ctb
- name: Luiz Irber
github_username: luizirber
- name: Tessa Pierce Ward
github_username: bluegenes
repository_link: https://github.com/sourmash-bio/sourmash
version_submitted: '4.8'
categories:
- data-processing-munging
editor:
name: Emily Jane McTavish
github_username: snacktavish Emily Jane McTavish
eic:
reviewers:
- name: Lili Andersson-Li
github_username: LilyAnderssonLee Lili Andersson-Li
- name: Elais Player
github_username: elais Elais Player
archive: '[](https://doi.org/10.5281/zenodo.10951577)'
version_accepted: '[v4.8.8](https://github.com/sourmash-bio/sourmash/releases/tag/v4.8.8)'
date_accepted: 2024-4-4
created_at: 2023-08-14 21:02:57+00:00
updated_at: 2024-06-07 17:50:48+00:00
closed_at:
issue_link: https://github.com/pyOpenSci/software-submission/issues/129
joss:
partners:
gh_meta:
name: sourmash
description: Quickly search, compare, and analyze genomic and metagenomic
data sets.
created_at: '2016-04-09'
stargazers_count: 446
watchers_count: 446
open_issues_count: 703
forks_count: 78
documentation: https://sourmash.readthedocs.io/en/latest/
contrib_count: 30
last_commit: '2024-07-01'
- package_name: Sciform
package_description: A package for converting python numbers (floats, Decimals)
into scientific-formatted strings more suitable for reading and presentation.
submitting_author:
name: Justin Gerber
github_username: jagerber48
all_current_maintainers:
- name: Justin Gerber
github_username: jagerber48
repository_link: https://github.com/jagerber48/sciform
version_submitted: 0.24.0
categories:
- data-visualization
editor:
name: Alex Batisse
github_username: Batalex
eic:
reviewers:
- name: Isabel Zimmerman
github_username: isabelizimm
- name: Michael Chow
github_username: machow
archive: '[](https://doi.org/10.5281/zenodo.10645273)'
version_accepted: 0.34.1
date_accepted: '2024-02-07'
created_at: 2023-07-21 04:41:08+00:00
updated_at: 2024-05-02 17:46:01+00:00
closed_at: 2024-05-02 16:42:00+00:00
issue_link: https://github.com/pyOpenSci/software-submission/issues/121
joss:
partners:
gh_meta:
name: sciform
description: A package for formatting numbers into scientific formatted strings.
created_at: '2023-05-26'
stargazers_count: 11
watchers_count: 11
open_issues_count: 13
forks_count: 2
documentation: https://sciform.readthedocs.io/en/stable/
contrib_count: 2
last_commit: '2024-05-28'
- package_name: astartes
package_description: Better Data Splits for Machine Learning
submitting_author:
name: Name
github_username: JacksonBurns
all_current_maintainers:
- name: Kevin Spiekermann
github_username: kspieks
- name:
github_username: himaghna
repository_link: https://github.com/JacksonBurns/astartes
version_submitted: v[1.1.2](https://github.com/JacksonBurns/astartes/releases/tag/v1.1.2)
categories:
- data-processing-munging
editor:
name: Chiara Marmo
github_username: cmarmo
eic:
reviewers:
- name:
github_username: BerylKanali
- name: Du Phan
github_username: du-phan
archive: '[](https://doi.org/10.5281/zenodo.8431894)'
version_accepted: v[1.1.3](https://github.com/JacksonBurns/astartes/releases/tag/v1.1.3)
date_accepted: '2023-10-15'
created_at: 2023-07-10 22:12:51+00:00
updated_at: 2023-12-13 10:34:01+00:00
closed_at: 2023-11-12 21:12:16+00:00
issue_link: https://github.com/pyOpenSci/software-submission/issues/120
joss:
partners:
gh_meta:
name: astartes
description: Better Data Splits for Machine Learning
created_at: '2022-04-22'
stargazers_count: 50
watchers_count: 50
open_issues_count: 16
forks_count: 2
documentation: https://jacksonburns.github.io/astartes/
contrib_count: 3
last_commit: '2024-03-01'
- package_name: XGI
package_description: XGI is a Python package for higher-order networks.
submitting_author:
name: Name
github_username: nwlandry
all_current_maintainers:
- name: Nicholas Landry
github_username: nwlandry
- name: Leo Torres
github_username: leotrs
- name: Maxime Lucas
github_username: maximelucas
- name: Iacopo Iacopini
github_username: iaciac
- name: Giovanni Petri
github_username: lordgrilo
- name: Alice Schwarze
github_username: acuschwarze
- name: Thomas Robiglio
github_username: thomasrobiglio
- name: alice patania
github_username: alpatania
repository_link: https://github.com/xgi-org/xgi
version_submitted: '0.7'
categories:
- data-retrieval
- data-processing-munging
- data-visualization
editor:
name: Szymon Moliński
github_username: SimonMolinsky
eic:
reviewers:
- name: Nhat Jonny Tran
github_username: JonnyTran
- name: Marta Leszczyńska
github_username: Reckony
archive: '[](https://doi.org/10.5281/zenodo.8365068)'
version_accepted: 0.7.4
date_accepted: '2023-09-23'
created_at: 2023-06-08 16:15:32+00:00
updated_at: 2024-05-15 15:42:25+00:00
closed_at: 2023-10-23 07:38:27+00:00
issue_link: https://github.com/pyOpenSci/software-submission/issues/115
joss:
partners:
- numfocus
gh_meta:
name: xgi
description: CompleX Group Interactions (XGI) is a Python package for higher-order
networks.
created_at: '2021-09-08'
stargazers_count: 171
watchers_count: 171
open_issues_count: 59
forks_count: 27
documentation: https://xgi.readthedocs.io
contrib_count: 14
last_commit: '2024-07-04'
- package_name: biocypher
package_description: framework for creating biomedical knowledge graphs
submitting_author:
name: Sebastian Lobentanzer
github_username: slobentanzer
all_current_maintainers:
- name: Sebastian Lobentanzer
github_username: slobentanzer
repository_link: https://github.com/biocypher/biocypher
version_submitted: 0.5.14
categories:
- data-retrieval
- data-extraction
- data-processing-munging
- data-deposition
- data-validation-testing
- workflow-automation
- database-interoperability
editor:
name: Ariane Sasso
github_username: arianesasso
eic:
reviewers:
- name: Lukas Heumos
github_username: Zethson
- name: Moritz E. Beber
github_username: Midnighter
- name:
github_username: Sinna
archive: '[](https://doi.org/10.5281/zenodo.10158204)'
version_accepted: v0.5.33
date_accepted: '2023-11-14'
created_at: 2023-05-04 18:08:32+00:00
updated_at: 2023-12-14 23:29:54+00:00
closed_at: 2023-11-28 18:03:51+00:00
issue_link: https://github.com/pyOpenSci/software-submission/issues/110
joss:
partners:
gh_meta:
name: biocypher
description: A unifying framework for biomedical research knowledge graphs
created_at: '2021-09-10'
stargazers_count: 194
watchers_count: 194
open_issues_count: 157
forks_count: 25
documentation: https://biocypher.org
contrib_count: 15
last_commit: '2024-06-18'
- package_name: cardsort
package_description: A python package to analyse data from open card sorting tasks
submitting_author:
name: Katharina Kloppenborg
github_username: katoss
all_current_maintainers:
- name: Katharina Kloppenborg
github_username: katoss
repository_link: https://github.com/katoss/cardsort
version_submitted: '[0.2.2](https://github.com/katoss/cardsort/releases/tag/v0.2.2)'
categories:
- data-extraction
- data-processing-munging
- data-visualization
editor:
name: Alex Batisse
github_username: Batalex
eic:
reviewers:
- name: Semidán Robaina
github_username: Robaina
- name:
github_username: khynder
archive: '[](https://doi.org/10.5281/zenodo.8214655)'
version_accepted: v [0.2.36](https://github.com/katoss/cardsort/releases/tag/v0.2.36)
date_accepted: '2023-08-16'
created_at: 2023-04-20 11:29:27+00:00
updated_at: 2023-12-13 10:40:37+00:00
closed_at: 2023-08-23 08:21:12+00:00
issue_link: https://github.com/pyOpenSci/software-submission/issues/102
joss:
partners:
gh_meta:
name: cardsort
description: A python package to analyse cardsorting data from kardsort.com
outputs.
created_at: '2023-03-16'
stargazers_count: 7
watchers_count: 7
open_issues_count: 1
forks_count: 1
documentation: https://cardsort.readthedocs.io
contrib_count: 4
last_commit: '2024-02-14'
- package_name: afscgap
package_description: Community contributed Python-based tools for working with
public bottom trawl surveys data from the NOAA Alaska Fisheries Science Center
Groundfish Assessment Program ([NOAA AFSC GAP](https://www.fisheries.noaa.gov/contact/groundfish-assessment-program)).
submitting_author:
name: Sam Pottinger
github_username: sampottinger
all_current_maintainers:
- name: A Samuel Pottinger
github_username: sampottinger
- name: Giulia Zarpellon
github_username: gizarp
repository_link: https://github.com/SchmidtDSE/afscgap
version_submitted: 0.0.7
categories:
- data-retrieval
- data-processing-munging
- data-visualization
editor:
name: Filipe
github_username: ocefpaf
eic:
reviewers:
- name: Tylar
github_username: 7yl4r
- name: Ayush Anand
github_username: ayushanand18
archive: '[](https://zenodo.org/badge/latestdoi/603308264)'
version_accepted: 0.0.7
date_accepted: '2023-05-30'
created_at: 2023-03-25 00:27:27+00:00
updated_at: 2023-08-29 02:15:31+00:00
closed_at: 2023-06-28 19:06:00+00:00
issue_link: https://github.com/pyOpenSci/software-submission/issues/93
joss:
partners:
gh_meta:
name: afscgap
description: Python-based tools for NOAA AFSC GAP marine species surveys data
created_at: '2023-02-18'
stargazers_count: 5
watchers_count: 5
open_issues_count: 1
forks_count: 4
documentation: https://pyafscgap.org
contrib_count: 2
last_commit: '2024-01-02'
- package_name: taxpasta
package_description: TAXonomic Profile Aggregation and STAndardisation
submitting_author:
name: Moritz E. Beber
github_username: Midnighter
all_current_maintainers:
- name: Moritz E. Beber
github_username: Midnighter
- name: Sofia Stamouli
github_username: sofstam
- name: James A. Fellows Yates
github_username: jfy133
repository_link: https://github.com/taxprofiler/taxpasta
version_submitted: 0.2.1
categories:
- data-processing-munging
editor:
name: C. Titus Brown
github_username: ctb
eic:
reviewers:
- name: Emily Jane McTavish
github_username: snacktavish
- name: Tessa Pierce Ward
github_username: bluegenes
archive: https://github.com/taxprofiler/taxpasta/releases/tag/0.4.0
version_accepted: 0.4.0
date_accepted: '2023-07-05'
created_at: 2023-03-02 16:50:50+00:00
updated_at: 2023-12-13 10:49:10+00:00
closed_at: 2023-07-12 14:22:46+00:00
issue_link: https://github.com/pyOpenSci/software-submission/issues/84
joss:
partners:
gh_meta:
name: taxpasta
description: TAXnomic Profile Aggregation and STAndardisation
created_at: '2022-06-03'
stargazers_count: 31
watchers_count: 31
open_issues_count: 11
forks_count: 6
documentation: https://taxpasta.readthedocs.io/
contrib_count: 5
last_commit: '2024-06-08'
- package_name: bibat
package_description: An interactive template for Bayesian statistical analysis
projects
submitting_author:
name: Teddy Groves
github_username: teddygroves
all_current_maintainers:
- name: Teddy Groves
github_username: teddygroves
repository_link: https://github.com/teddygroves/bibat/
version_submitted: 0.1.0
categories:
- workflow-automation
editor:
name: Meenal Jhajharia
github_username: mjhajharia
eic:
reviewers:
- name: Oriol Abril-Pla
github_username: OriolAbril
- name: Alexey Izmailov
github_username: alizma
archive: '[](https://doi.org/10.5281/zenodo.8124312)'
version_accepted: 0.1.10
date_accepted: '2023-07-05'
created_at: 2023-03-01 14:16:51+00:00
updated_at: 2023-12-14 23:37:44+00:00
closed_at: 2023-12-13 22:30:02+00:00
issue_link: https://github.com/pyOpenSci/software-submission/issues/83
joss:
partners:
gh_meta:
name: bibat
description: A batteries-included template for Bayesian data analysis projects
created_at: '2021-03-04'
stargazers_count: 18
watchers_count: 18
open_issues_count: 13
forks_count: 2
documentation: https://bibat.readthedocs.io/
contrib_count: 1
last_commit: '2024-04-10'
- package_name: Python-graphblas
package_description: 'Python library for GraphBLAS: high-performance sparse linear
algebra for scalable graph analytics'
submitting_author:
name: Erik Welch
github_username: eriknw
all_current_maintainers:
- name: Erik Welch
github_username: eriknw
- name: Jim Kitchen
github_username: jim22k
- name: Sultan Orazbayev
github_username: SultanOrazbayev
repository_link: https://github.com/python-graphblas/python-graphblas
version_submitted: 2023.1.0
categories:
- data-munging
- scientific-software-wrapper
editor:
name: Tom Russell
github_username: tomalrussell
eic:
reviewers:
- name: Jonny Saunders
github_username: sneakers-the-rat
- name: Szabolcs Horvát
github_username: szhorvat
archive: '[](https://doi.org/10.5281/zenodo.8125660)'
version_accepted: 2023.7.0
date_accepted: '2023-07-14'
created_at: 2023-02-04 23:07:20+00:00
updated_at: 2024-03-12 17:32:53+00:00
closed_at: 2023-07-27 17:48:29+00:00
issue_link: https://github.com/pyOpenSci/software-submission/issues/81
joss:
partners:
gh_meta:
name: python-graphblas
description: 'Python library for GraphBLAS: high-performance sparse linear
algebra for scalable graph analytics'
created_at: '2019-11-11'
stargazers_count: 120
watchers_count: 120
open_issues_count: 58
forks_count: 15
documentation: https://python-graphblas.readthedocs.io/en/stable/
contrib_count: 10
last_commit: '2024-02-18'
- package_name: xclim
package_description: Climate indices computation package based on Xarray
submitting_author:
name: Trevor James Smith
github_username: Zeitsperre
all_current_maintainers:
- name: Trevor James Smith
github_username: Zeitsperre
- name: Travis Logan
github_username: tlogan2000
- name: Pascal Bourgault
github_username: aulemahal
repository_link: https://github.com/Ouranosinc/xclim
version_submitted: v0.40.0
categories:
- data-munging
- reproducibility
- geospatial
editor:
name: Alex Batisse
github_username: Batalex
eic:
reviewers:
- name: James Munroe
github_username: jmunroe
- name: Agustina
github_username: aguspesce
archive: '[](https://zenodo.org/badge/latestdoi/142608764)'
version_accepted: v0.42.0
date_accepted: '2023-04-11'
created_at: 2023-01-16 16:59:20+00:00
updated_at: 2023-09-18 22:18:20+00:00
closed_at: 2023-05-22 04:04:53+00:00
issue_link: https://github.com/pyOpenSci/software-submission/issues/73
joss:
partners:
gh_meta:
name: xclim
description: 'Library of derived climate variables, ie climate indicators,
based on xarray. '
created_at: '2018-07-27'
stargazers_count: 310
watchers_count: 310
open_issues_count: 66
forks_count: 52
documentation: https://xclim.readthedocs.io/en/stable/
contrib_count: 30
last_commit: '2024-07-04'
- package_name: crowsetta
package_description: A Python tool to work with any format for annotating animal
vocalizations and bioacoustics data.
submitting_author:
name: David Nicholson
github_username: NickleDave
all_current_maintainers:
- name: David Nicholson
github_username: NickleDave
repository_link: https://github.com/vocalpy/crowsetta
version_submitted: '[4.0.0.post2](https://github.com/vocalpy/crowsetta/releases/tag/4.0.0.post2)'
categories:
- data-extraction
- data-munging
- reproducibility
editor:
name: Chiara Marmo
github_username: cmarmo
eic:
reviewers:
- name: Tessa Rhinehart
github_username: rhine3
- name: Sylvain HAUPERT
github_username: shaupert
archive: '[](https://zenodo.org/badge/latestdoi/159904494)'
version_accepted: v [5.0](https://github.com/vocalpy/crowsetta/releases/tag/5.0.0)
date_accepted: '2023-03-28'
created_at: 2023-01-03 19:39:16+00:00
updated_at: 2023-08-29 01:27:19+00:00
closed_at: 2023-04-13 20:26:00+00:00
issue_link: https://github.com/pyOpenSci/software-submission/issues/68
joss:
partners:
gh_meta:
name: crowsetta
description: A tool to work with any format for annotating vocalizations
created_at: '2018-12-01'
stargazers_count: 49
watchers_count: 49
open_issues_count: 35
forks_count: 3
documentation: https://crowsetta.readthedocs.io/en/latest/
contrib_count: 2
last_commit: '2024-07-02'
- package_name: Pynteny
package_description: Query sequence database by HMMs arranged in predefined synteny
structure
submitting_author:
name: Semidán Robaina
github_username: Robaina
all_current_maintainers:
- name: Semidán Robaina
github_username: Robaina
repository_link: https://github.com/Robaina/Pynteny
version_submitted: v0.0.5
categories:
- data-retrieval