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Dockerfile
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Dockerfile
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FROM alpine:3.8
MAINTAINER Jan Janssen <janssen@mpie.de>
# Inspired by :
# * https://github.com/jupyter/docker-stacks
# * https://github.com/CognitiveScale/alpine-miniconda
# * https://github.com/show0k/alpine-jupyter-docker
# * https://github.com/datarevenue-berlin/alpine-miniconda
# Install glibc and useful packages
RUN echo "@testing http://nl.alpinelinux.org/alpine/edge/testing" >> /etc/apk/repositories \
&& apk --update add \
bash \
curl \
ca-certificates \
libstdc++ \
glib \
git \
tini@testing \
&& curl "https://alpine-pkgs.sgerrand.com/sgerrand.rsa.pub" -o /etc/apk/keys/sgerrand.rsa.pub \
&& curl -L "https://github.com/sgerrand/alpine-pkg-glibc/releases/download/2.23-r3/glibc-2.23-r3.apk" -o glibc.apk \
&& apk add glibc.apk \
&& curl -L "https://github.com/sgerrand/alpine-pkg-glibc/releases/download/2.23-r3/glibc-bin-2.23-r3.apk" -o glibc-bin.apk \
&& apk add glibc-bin.apk \
&& curl -L "https://github.com/andyshinn/alpine-pkg-glibc/releases/download/2.25-r0/glibc-i18n-2.25-r0.apk" -o glibc-i18n.apk \
&& apk add --allow-untrusted glibc-i18n.apk \
&& /usr/glibc-compat/bin/localedef -i en_US -f UTF-8 en_US.UTF-8 \
&& /usr/glibc-compat/sbin/ldconfig /lib /usr/glibc/usr/lib \
&& rm -rf glibc*apk /var/cache/apk/*
# Configure environment
ENV CONDA_DIR /opt/conda
ENV PATH ${CONDA_DIR}/bin:${PATH}
ENV SHELL /bin/bash
ENV PYIRON_USER pyiron
ENV PYIRON_UID 1000
ENV LC_ALL en_US.UTF-8
ENV LANG en_US.UTF-8
ENV LANGUAGE en_US.UTF-8
ENV HOME /home/${PYIRON_USER}
# Configure Miniconda
ENV MINICONDA_VER 4.5.1
ENV MINICONDA Miniconda3-${MINICONDA_VER}-Linux-x86_64.sh
ENV MINICONDA_URL https://repo.continuum.io/miniconda/${MINICONDA}
ENV MINICONDA_MD5_SUM 0c28787e3126238df24c5d4858bd0744
COPY . ${HOME}
# Create user with UID=1000 and in the 'users' group
RUN adduser -s ${SHELL} --disabled-password --gecos "Default user" -u ${PYIRON_UID} -D ${PYIRON_USER} \
&& mkdir -p ${CONDA_DIR} \
&& chown ${PYIRON_USER} ${CONDA_DIR} \
&& chown -R ${PYIRON_USER} ${HOME}
USER ${PYIRON_USER}
# Install
RUN cd /tmp \
&& mkdir -p ${CONDA_DIR} \
&& curl -L ${MINICONDA_URL} -o miniconda.sh \
&& echo "${MINICONDA_MD5_SUM} miniconda.sh" | md5sum -c - \
&& ${SHELL} miniconda.sh -f -b -p ${CONDA_DIR} \
&& rm miniconda.sh \
&& ${CONDA_DIR}/bin/conda install --yes conda==${MINICONDA_VER} \
&& conda env update -n root -f "${HOME}/binder/environment.yml" \
&& ${SHELL} ${HOME}/binder/postBuild \
&& conda clean --all -y \
&& rm ${HOME}/Dockerfile ${HOME}/deploy.sh
USER root
# Configure container startup as root
WORKDIR ${HOME}/
ENTRYPOINT ["/sbin/tini", "--"]
CMD ["jupyter", "notebook", "--ip", "0.0.0.0"]
# Switch back to pyiron to avoid accidental container runs as root
USER ${PYIRON_USER}