docker command is not correct

[jkitchin]

Summary

The command documented at https://pyiron.readthedocs.io/en/latest/source/installation.html#docker-container does not work.

Specifically,

docker run -i -t -p 8888:8888 pyiron/pyiron /bin/bash -c "source /srv/conda/envs/notebook/bin/activate; jupyter lab --notebook-dir=/home/pyiron/ --ip='*' --port=8888"

fails with this error:

/bin/bash: /srv/conda/envs/notebook/bin/activate: No such file or directory
[C 2022-12-21 14:49:16.949 ServerApp] Bad config encountered during initialization: No such directory: ''/home/pyiron''

The issues are:

1. There is no directory for /home/pyiron. It should be /home/jovyan I think.
2. /srv/conda/envs/notebook/bin/activate does not exist

In the image:

(base) jovyan@0d53d6ea0639:~$ ls /home
jovyan
(base) jovyan@0d53d6ea0639:~$ ls /srv
(base) jovyan@0d53d6ea0639:~$ 

This command works for me:
docker run -i -t -p 8888:8888 pyiron/pyiron /bin/bash -c "jupyter lab --notebook-dir=/home/jovyan/ --ip='*' --port=8888"

[jan-janssen]

Hi @jkitchin ,

Thanks for pointing this out - it seems our documentation was not updated ... when the location of the conda environment changed. The right command should be:

docker run -i -t -p 8888:8888 pyiron/pyiron /bin/bash -c "source /opt/conda/bin/activate; jupyter notebook --notebook-dir=/home/pyiron/ --ip='*' --port=8888"

As explained in the docker-stacks repository https://github.com/pyiron/docker-stacks

I am going to open a pull request to fix this.

Best,

Jan