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patient.py
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patient.py
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# Copyright (C) 2019 Cancer Care Associates and Simon Biggs
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
# http://www.apache.org/licenses/LICENSE-2.0
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import pathlib
from pymedphys._utilities import patient as pmp_util_patient
from . import utility
def read_patient_name(patient_directory):
patient_directory = pathlib.Path(patient_directory)
patient_id = str(patient_directory.name).split("~")[1]
demographic_file = patient_directory.joinpath(f"demographic.{patient_id}")
if not demographic_file.exists():
raise ValueError(
f"Could not find demographic file at the location {str(demographic_file)}"
)
read_monaco_file = utility.create_read_monaco_file()
contents = read_monaco_file(demographic_file)
patient_name = contents.split("\n")[2]
try:
patient_name = pmp_util_patient.convert_patient_name(patient_name)
except: # pylint: disable = bare-except
pass
return patient_name