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R-CGHnormaliter.spec
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R-CGHnormaliter.spec
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%global packname CGHnormaliter
%global rlibdir %{_libdir}/R/library
Name: R-%{packname}
Version: 1.8.0
Release: 1%{?dist}
Summary: Normalization of array CGH data with imbalanced aberrations.
Group: Applications/Engineering
License: GPL (>= 3)
URL: http://bioconductor.org/packages/release/bioc/html/%{packname}.html
Source0: http://bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
Requires: R-CGHcall R-CGHbase
BuildRequires: R-devel tex(latex) R-CGHcall R-CGHbase
%description
Normalization of array comparative genomic hybridization (aCGH) data. The
algorithm uses an iterative procedure that effectively eliminates the
influence of imbalanced copy numbers. This leads to a more reliable
assessment of copy number alterations (CNAs).
%prep
%setup -q -c -n %{packname}
%build
%install
rm -rf %{buildroot}
mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
%clean
rm -rf %{buildroot}
%files
%defattr(-, root, root, -)
%changelog
* Fri Dec 02 2011 Pierre-Yves Chibon <pingou@pingoured.fr> 1.8.0-1
- initial package for Fedora