Sorting tests fail on Debian sid with numpy 1.26

[avalentino]

After the update of numpy to 1.26 we started observing the following failures in the compyle unittests both with Python 3.11. and 3.12.

The error is the following:

python3.12 -m pytest -k "not test_that_multiple_compiles_do_not_occur_for_same_source and not test_const_as_call_arg and not test_const_in_return" --ignore=/<<PKGBUILDDIR>>/compyle/tests/test_cuda.py --ignore=/<<PKGBUILDDIR>>/compyle/tests/test_parallel.py /<<PKGBUILDDIR>>/compyle/tests
> ============================= test session starts ==============================
> platform linux -- Python 3.12.2, pytest-8.1.1, pluggy-1.4.0
> rootdir: /<<PKGBUILDDIR>>
> configfile: pyproject.toml
> collected 327 items / 3 deselected / 324 selected
> 
> ../../../compyle/tests/test_array.py ..s..s..s..s..s..s..s..s..s..s..s.. [ 10%]
> s..s.FsF..s.sx..s..s..s..s..s..s..s..s..s..s..s..s..s..s..s..s..s..s..s. [ 33%]
> .s..s..s..s..s..s..ss..s......sss......sss......sss..s                   [ 49%]
> ../../../compyle/tests/test_ast_utils.py .......                         [ 51%]
> ../../../compyle/tests/test_capture_stream.py .....                      [ 53%]
> ../../../compyle/tests/test_config.py ............                       [ 57%]
> ../../../compyle/tests/test_cython_generator.py .................        [ 62%]
> ../../../compyle/tests/test_ext_module.py ........                       [ 64%]
> ../../../compyle/tests/test_gpu_struct.py s                              [ 65%]
> ../../../compyle/tests/test_jit.py ..........................            [ 73%]
> ../../../compyle/tests/test_low_level.py s.s.....                        [ 75%]
> ../../../compyle/tests/test_profile.py .....                             [ 77%]
> ../../../compyle/tests/test_template.py .....                            [ 78%]
> ../../../compyle/tests/test_translator.py .............................. [ 87%]
> .........................                                                [ 95%]
> ../../../compyle/tests/test_transpiler.py ...                            [ 96%]
> ../../../compyle/tests/test_types.py .......                             [ 98%]
> ../../../compyle/tests/test_utils.py ....                                [100%]
> 
> =================================== FAILURES ===================================
> __________________________ test_sort_by_keys[opencl] ___________________________
> 
> backend = 'opencl'
> 
>     @check_all_backends
>     def test_sort_by_keys(backend):
>         check_import(backend)
>     
>         # Given
>         nparr1 = np.random.randint(0, 100, 16, dtype=np.int32)
>         nparr2 = np.random.randint(0, 100, 16, dtype=np.int32)
>         dev_array1, dev_array2 = array.wrap(nparr1, nparr2, backend=backend)
>     
>         # When
>         out_array1, out_array2 = array.sort_by_keys([dev_array1, dev_array2])
>     
>         # Then
>         order = np.argsort(nparr1)
>         act_result1 = np.take(nparr1, order)
>         act_result2 = np.take(nparr2, order)
>         assert np.all(out_array1.get() == act_result1)
> >       assert np.all(out_array2.get() == act_result2)
> E       assert False
> E        +  where False = <function all at 0x7f4cb39aa9f0>(array([ 9,  3...  dtype=int32) == array([ 9,  3...  dtype=int32)
> E        +    where <function all at 0x7f4cb39aa9f0> = np.all
> E           
> E           Use -v to get more diff)
> 
> ../../../compyle/tests/test_array.py:273: AssertionError
> ------------------------------ Captured log call -------------------------------
> DEBUG    pyopencl.cache:cache.py:378 build program: binary cache miss (key: 4bf4d189ce2047b8b06d9a0a5bca2e9d)
> DEBUG    pyopencl.cache:cache.py:413 build program: start building program from source on <pyopencl.Device 'cpu-skylake-avx512-Intel(R) Xeon(R) Platinum 8259CL CPU @ 2.50GHz' on 'Portable Computing Language' at 0x2958b20>
> DEBUG    pyopencl.cache:cache.py:419 build program: from-source build complete
> DEBUG    pytools.persistent_dict:persistent_dict.py:758 pyopencl-invoker-cache-v41: disk cache hit [key=25d010a3d8d1b7c7137e612326d8db5d04a1e8ec5bb2a48c57295ed6430bda96]
> INFO     pyopencl:__init__.py:469 build program: kernel 'get_size_and_offsets' was part of a lengthy source build resulting from a binary cache miss (0.28 s)
> DEBUG    pytools.persistent_dict:persistent_dict.py:727 pyopencl-generated-scan-kernel-cache-v1: disk cache miss [key=611aa02c9ab60fec70c25bc297d9b1653da0a6e28c0f8ca21971a6c5efbcd16e]
> DEBUG    pyopencl.scan:scan.py:1194 cache miss for generated scan kernel 'scan'
> DEBUG    pyopencl.cache:cache.py:378 build program: binary cache miss (key: 653143575044338b788fc83353afc3f7)
> DEBUG    pyopencl.cache:cache.py:413 build program: start building program from source on <pyopencl.Device 'cpu-skylake-avx512-Intel(R) Xeon(R) Platinum 8259CL CPU @ 2.50GHz' on 'Portable Computing Language' at 0x2958b20>
> DEBUG    pyopencl.cache:cache.py:419 build program: from-source build complete
> DEBUG    pytools.persistent_dict:persistent_dict.py:727 pyopencl-invoker-cache-v41: disk cache miss [key=49efc131ac55675366d11c67a6021ffc9ab51061e766db708184340ec1e7b944]
> DEBUG    pytools.persistent_dict:persistent_dict.py:696 pyopencl-invoker-cache-v41: disk cache store [key=49efc131ac55675366d11c67a6021ffc9ab51061e766db708184340ec1e7b944]
> INFO     pyopencl:__init__.py:469 build program: kernel 'scan_lev1' was part of a lengthy source build resulting from a binary cache miss (1.37 s)
> DEBUG    pytools.persistent_dict:persistent_dict.py:727 pyopencl-invoker-cache-v41: disk cache miss [key=eca878c5a15faa094d2cd87ee42508762ce2d70071b18e16df9b2f56071b9e2a]
> DEBUG    pytools.persistent_dict:persistent_dict.py:696 pyopencl-invoker-cache-v41: disk cache store [key=eca878c5a15faa094d2cd87ee42508762ce2d70071b18e16df9b2f56071b9e2a]
> DEBUG    pytools.persistent_dict:persistent_dict.py:696 pyopencl-generated-scan-kernel-cache-v1: disk cache store [key=611aa02c9ab60fec70c25bc297d9b1653da0a6e28c0f8ca21971a6c5efbcd16e]
> DEBUG    pyopencl.cache:cache.py:384 build program: binary cache hit (key: 653143575044338b788fc83353afc3f7)
> DEBUG    pytools.persistent_dict:persistent_dict.py:758 pyopencl-invoker-cache-v41: disk cache hit [key=49efc131ac55675366d11c67a6021ffc9ab51061e766db708184340ec1e7b944]
> DEBUG    pytools.persistent_dict:persistent_dict.py:758 pyopencl-invoker-cache-v41: disk cache hit [key=eca878c5a15faa094d2cd87ee42508762ce2d70071b18e16df9b2f56071b9e2a]
> DEBUG    pyopencl.cache:cache.py:378 build program: binary cache miss (key: a7aa988ad08d4c5636b571b0cd4ae55e)
> DEBUG    pyopencl.cache:cache.py:413 build program: start building program from source on <pyopencl.Device 'cpu-skylake-avx512-Intel(R) Xeon(R) Platinum 8259CL CPU @ 2.50GHz' on 'Portable Computing Language' at 0x2958b20>
> DEBUG    pyopencl.cache:cache.py:419 build program: from-source build complete
> DEBUG    pytools.persistent_dict:persistent_dict.py:727 pyopencl-invoker-cache-v41: disk cache miss [key=02d42ae23a40f1caecefc2770cde1b1b442262a489c1b3a002673425df9233b7]
> DEBUG    pytools.persistent_dict:persistent_dict.py:696 pyopencl-invoker-cache-v41: disk cache store [key=02d42ae23a40f1caecefc2770cde1b1b442262a489c1b3a002673425df9233b7]
> INFO     pyopencl:__init__.py:469 build program: kernel 'scan_lev2' was part of a lengthy source build resulting from a binary cache miss (1.30 s)
> DEBUG    pytools.persistent_dict:persistent_dict.py:727 pyopencl-invoker-cache-v41: disk cache miss [key=d913f3cd98e8844fab3f92bfc28d0e5dca7af2f7da3b784402ba106d08be4e68]
> DEBUG    pytools.persistent_dict:persistent_dict.py:696 pyopencl-invoker-cache-v41: disk cache store [key=d913f3cd98e8844fab3f92bfc28d0e5dca7af2f7da3b784402ba106d08be4e68]
> DEBUG    pyopencl.cache:cache.py:378 build program: binary cache miss (key: fdd1b09b4764e411254319832d21c5fb)
> DEBUG    pyopencl.cache:cache.py:413 build program: start building program from source on <pyopencl.Device 'cpu-skylake-avx512-Intel(R) Xeon(R) Platinum 8259CL CPU @ 2.50GHz' on 'Portable Computing Language' at 0x2958b20>
> DEBUG    pyopencl.cache:cache.py:419 build program: from-source build complete
> DEBUG    pytools.persistent_dict:persistent_dict.py:727 pyopencl-invoker-cache-v41: disk cache miss [key=01951cb5ce3fe8984bb56f98fa6e9163f6396390a612759f911c18d9a47df5c2]
> DEBUG    pytools.persistent_dict:persistent_dict.py:696 pyopencl-invoker-cache-v41: disk cache store [key=01951cb5ce3fe8984bb56f98fa6e9163f6396390a612759f911c18d9a47df5c2]
> INFO     pyopencl:__init__.py:469 build program: kernel 'scan_final_update' was part of a lengthy source build resulting from a binary cache miss (0.29 s)
> DEBUG    pytools.persistent_dict:persistent_dict.py:727 pyopencl-invoker-cache-v41: disk cache miss [key=f41f4aa10a5614c18e468c40b4ca31d6c64a59c262ed220e22930319f10ea84b]
> DEBUG    pytools.persistent_dict:persistent_dict.py:696 pyopencl-invoker-cache-v41: disk cache store [key=f41f4aa10a5614c18e468c40b4ca31d6c64a59c262ed220e22930319f10ea84b]
> ___________________________ test_radix_sort_by_keys ____________________________
> 
>     def test_radix_sort_by_keys():
>         backend = 'cython'
>         for use_openmp in [True, False]:
>             get_config().use_openmp = use_openmp
>             # Given
>             nparr1 = np.random.randint(0, 100, 16, dtype=np.int32)
>             nparr2 = np.random.randint(0, 100, 16, dtype=np.int32)
>             dev_array1, dev_array2 = array.wrap(nparr1, nparr2, backend=backend)
>     
>             # When
>             out_array1, out_array2 = array.sort_by_keys([dev_array1, dev_array2],
>                                                         use_radix_sort=True)
>     
>             # Then
>             order = np.argsort(nparr1)
>             act_result1 = np.take(nparr1, order)
>             act_result2 = np.take(nparr2, order)
>             assert np.all(out_array1.get() == act_result1)
> >           assert np.all(out_array2.get() == act_result2)
> E           assert False
> E            +  where False = <function all at 0x7f4cb39aa9f0>(array([33,  7...  dtype=int32) == array([33,  7...  dtype=int32)
> E            +    where <function all at 0x7f4cb39aa9f0> = np.all
> E               
> E               Use -v to get more diff)
> 
> ../../../compyle/tests/test_array.py:294: AssertionError
> ----------------------------- Captured stdout call -----------------------------
> [1/1] Cythonizing /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_compyle/.compyle/source/py3.1-linux-x86_64/m_38c1c650fcf31d53befb93aa70eceb48.pyx
> ------------------------------ Captured log call -------------------------------
> INFO     compyle.ext_module:ext_module.py:321 Compiling code at: /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_compyle/.compyle/source/py3.1-linux-x86_64/m_38c1c650fcf31d53befb93aa70eceb48.pyx
> DEBUG    root:discovery.py:490 No `name` configuration, performing automatic discovery
> INFO     root:dist.py:985 running build_ext
> INFO     root:build_ext.py:521 building 'm_38c1c650fcf31d53befb93aa70eceb48' extension
> INFO     root:spawn.py:38 x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_compyle/.compyle/source/py3.1-linux-x86_64/m_38c1c650fcf31d53befb93aa70eceb48.cpp -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_compyle/.compyle/source/py3.1-linux-x86_64/build/temp.linux-x86_64-cpython-312/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_compyle/.compyle/source/py3.1-linux-x86_64/m_38c1c650fcf31d53befb93aa70eceb48.o -fopenmp
> INFO     root:spawn.py:38 x86_64-linux-gnu-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_compyle/.compyle/source/py3.1-linux-x86_64/build/temp.linux-x86_64-cpython-312/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_compyle/.compyle/source/py3.1-linux-x86_64/m_38c1c650fcf31d53befb93aa70eceb48.o -L/usr/lib/x86_64-linux-gnu -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_compyle/.compyle/source/py3.1-linux-x86_64/build/lib.linux-x86_64-cpython-312/m_38c1c650fcf31d53befb93aa70eceb48.cpython-312-x86_64-linux-gnu.so -fopenmp
> =============================== warnings summary ===============================
> compyle/tests/test_array.py: 6 warnings
> compyle/tests/test_jit.py: 5 warnings
> compyle/tests/test_translator.py: 93 warnings
>   /usr/lib/python3.12/ast.py:407: DeprecationWarning: visit_Num is deprecated; add visit_Constant
>     return visitor(node)
> 
> compyle/tests/test_array.py: 4 warnings
> compyle/tests/test_translator.py: 93 warnings
>   /<<PKGBUILDDIR>>/compyle/translator.py:682: DeprecationWarning: Attribute n is deprecated and will be removed in Python 3.14; use value instead
>     return str(node.n)

[CUT]

> =========================== short test summary info ============================
> FAILED ../../../compyle/tests/test_array.py::test_sort_by_keys[opencl] - asse...
> FAILED ../../../compyle/tests/test_array.py::test_radix_sort_by_keys - assert...
> = 2 failed, 264 passed, 57 skipped, 3 deselected, 1 xfailed, 354 warnings in 334.14s (0:05:34) =