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Question about get_reference_positions #836

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weir12 opened this issue Aug 15, 2019 · 1 comment
Closed

Question about get_reference_positions #836

weir12 opened this issue Aug 15, 2019 · 1 comment

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@weir12
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weir12 commented Aug 15, 2019

Hi:
I'm a little confused about the return list of this function.
1.As the Introduction saying:The returned list will thus be of the same length as the read(if full_length=True).Is the sequence length the same as in fastq files?
2.If I want to know where the tenth base of a read is aligned in the reference sequence.Can I extract it directly by return_list[9]?
I want to thank everyone for your help.

@NickSto
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NickSto commented Aug 22, 2019

@weir12 FWIW, I haven't tried the full_length option yet, but that looks correct to me. Just remember the coordinates in the list are 0-based.

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