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pywren not working for numba functions in 0.1 due to module serialization weirdness #83

Closed
Vaishaal opened this issue Mar 9, 2017 · 2 comments
Closed

pywren not working for numba functions in 0.1 due to module serialization weirdness #83

Vaishaal opened this issue Mar 9, 2017 · 2 comments
Assignees
@ericmjonas
Labels
serialization
Milestone
v0.2

Comments

@Vaishaal
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Vaishaal commented Mar 9, 2017 •
edited 

import pywren
from numba import jit

pwex = pywren.default_executor()

def foo(x):
    return x**2

@jit
def bar(x):
    return x**2

#passes
results = pwex.map(foo, [2])
pywren.wait(results)
print(results[0].result())


#fails
results = pwex.map(bar, [2])
pywren.wait(results)
print(results[0].result())

This is related to #82 as this is where the nonascii.py gets imported. But it shouldn't come into the world in the first place!

IIRC this usecase worked pre-0.1

Exception:

Traceback (most recent call last):
File "numba_test.py", line 20, in
results = pwex.map(bar, [2])
File "/data/vaishaal/anaconda2/lib/python2.7/site-packages/pywren/wren.py", line 265, in map
module_data = self.create_mod_data(mod_paths)
File "/data/vaishaal/anaconda2/lib/python2.7/site-packages/pywren/wren.py", line 125, in create_mod_data
module_data[f[len(pkg_root)+1:]] = mod_str.decode('utf-8')
File "/data/vaishaal/anaconda2/lib/python2.7/encodings/utf_8.py", line 16, in decode
return codecs.utf_8_decode(input, errors, True)
UnicodeDecodeError: 'utf8' codec can't decode byte 0xb1 in position 81: invalid start byte

module search path for foo:

File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/html/init.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/html/parser.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/html/entities.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/watchtower/init.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/http/client.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/http/cookiejar.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/http/init.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/http/cookies.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/http/server.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/_thread/init.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/queue/init.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/pywren/runtime.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/pywren/wrenhandler.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/pywren/logtest.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/pywren/wrenutil.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/pywren/wrenconfig.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/pywren/wren.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/pywren/runtestprocess.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/pywren/version.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/pywren/init.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/pywren/invokers.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/pywren/testprocess.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/pywren/local.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/pywren/ec2standalone.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/pywren/queues.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/pywren/s3util.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/pywren/wrenlogging.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/pywren/pickletest.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/pywren/multiwren.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/pywren/jobrunner.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/pywren/cloudpickle/testmod2.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/pywren/cloudpickle/init.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/pywren/cloudpickle/cloudpickle.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/pywren/cloudpickle/serialize.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/pywren/cloudpickle/preinstalls.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/pywren/cloudpickle/module_dependency.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/pywren/cloudpickle/testmod.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/pywren/scripts/standalone.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/pywren/scripts/init.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/pywren/scripts/pywrencli.py

Module search path for bar:

File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/cffi/cffi_opcode.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/cffi/init.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/cffi/vengine_cpy.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/cffi/cparser.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/cffi/gc_weakref.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/cffi/lock.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/cffi/model.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/cffi/vengine_gen.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/cffi/verifier.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/cffi/ffiplatform.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/cffi/api.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/cffi/recompiler.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/cffi/backend_ctypes.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/cffi/commontypes.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/cffi/setuptools_ext.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/pexpect/ANSI.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/pexpect/run.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/pexpect/FSM.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/pexpect/pty_spawn.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/pexpect/init.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/pexpect/fdpexpect.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/pexpect/popen_spawn.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/pexpect/utils.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/pexpect/exceptions.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/pexpect/screen.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/pexpect/expect.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/pexpect/replwrap.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/pexpect/pxssh.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/pexpect/spawnbase.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/jsonschema/compat.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/jsonschema/_reflect.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/jsonschema/cli.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/jsonschema/validators.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/jsonschema/init.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/jsonschema/_validators.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/jsonschema/exceptions.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/jsonschema/main.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/jsonschema/_format.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/jsonschema/_utils.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/jsonschema/_version.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/jsonschema/tests/test_validators.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/jsonschema/tests/test_exceptions.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/jsonschema/tests/compat.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/jsonschema/tests/init.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/jsonschema/tests/test_cli.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/jsonschema/tests/test_format.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/jsonschema/tests/test_jsonschema_test_suite.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/backports/init.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/backports/ssl_match_hostname/init.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/backports/configparser/helpers.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/backports/configparser/init.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/backports/shutil_get_terminal_size/init.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/backports/shutil_get_terminal_size/get_terminal_size.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/py/_builtin.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/py/_apipkg.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/py/init.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/py/_std.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/py/_xmlgen.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/py/_iniconfig.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/py/test.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/py/__metainfo.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/py/_error.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/py/_code/code.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/py/_code/_py2traceback.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/py/_code/_assertionnew.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/py/_code/_assertionold.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/py/_code/source.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/py/_code/init.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/py/_code/assertion.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/py/_log/log.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/py/_log/init.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/py/_log/warning.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/py/_path/cacheutil.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/py/_path/init.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/py/_path/common.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/py/_path/svnurl.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/py/_path/local.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/py/_path/svnwc.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/py/_process/forkedfunc.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/py/_process/init.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/py/_process/killproc.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/py/_process/cmdexec.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/py/_io/capture.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/py/_io/init.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/py/_io/terminalwriter.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/py/_io/saferepr.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/reprlib/init.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/notebookapp.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/_sysinfo.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/allow76.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/log.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/init.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/serverextensions.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/utils.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/nbextensions.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/main.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/jstest.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/_version.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/edit/handlers.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/edit/init.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/terminal/handlers.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/terminal/init.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/terminal/api_handlers.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/tests/launchnotebook.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/tests/test_files.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/tests/init.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/tests/test_utils.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/tests/test_notebookapp.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/tests/test_serialize.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/tests/test_paths.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/tests/test_nbextensions.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/tests/test_serverextensions.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/auth/logout.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/auth/init.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/auth/security.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/auth/login.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/base/handlers.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/base/zmqhandlers.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/base/init.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/kernelspecs/handlers.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/kernelspecs/init.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/files/handlers.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/files/init.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/nbconvert/handlers.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/nbconvert/init.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/notebook/handlers.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/notebook/init.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/tree/handlers.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/tree/init.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/services/init.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/auth/tests/init.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/auth/tests/test_security.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/nbconvert/tests/init.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/nbconvert/tests/test_nbconvert_handlers.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/tree/tests/test_tree_handler.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/tree/tests/init.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/services/kernelspecs/handlers.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/services/kernelspecs/init.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/services/contents/handlers.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/services/contents/filecheckpoints.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/services/contents/filemanager.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/services/contents/tz.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/services/contents/init.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/services/contents/checkpoints.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/services/contents/manager.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/services/contents/fileio.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/services/security/handlers.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/services/security/init.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/services/sessions/handlers.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/services/sessions/init.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/services/sessions/sessionmanager.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/services/nbconvert/handlers.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/services/nbconvert/init.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/services/kernels/handlers.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/services/kernels/init.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/services/kernels/kernelmanager.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/services/config/handlers.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/services/config/init.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/services/config/manager.py
File name is /data/vaishaal/anaconda2/lib/python2.7/site-packages/notebook/services/api/handlers.py
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@Vaishaal Vaishaal changed the title pywren not working for numba functions any more due to module serialization weirdness pywren not working for numba functions in 0.1 due to module serialization weirdness Mar 9, 2017
@shivaram shivaram added this to the v0.2 milestone Mar 9, 2017
@ericmjonas
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@Vaishaal I think I have this working in the serialization-bugs branch?

import pywren
from numba import jit
import time

pwex = pywren.default_executor()

def foo(N):
    x = 0.0
    for i in range(N):
        x += 1.0
    return x

@jit
def bar(N):
    x = 0.0
    for i in range(N):
        x += 1.0
    return x


# Time isn't supported in numba so we have to wrap
def time_foo(N):
    t1 = time.time()
    for i in range(5):
        foo(N)
    t2 = time.time()
    return t2-t1

def time_bar(N):
    t1 = time.time()
    for i in range(5):
        bar(N)
    t2 = time.time()
    return t2-t1

#passes
N = 40000000
results = pwex.map(time_foo, [N])
pywren.wait(results)
print(results[0].result())


#fails
results = pwex.map(time_bar, [N])
pywren.wait(results)
print(results[0].result())

when I run it I get:

line-integral:tests jonas$ python foo.py
14.049754858
0.317600011826

is there a way you could try this branch, @Vaishaal, and let me know if it works? For reference, I'm launching it from my local mac.

@Vaishaal
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seems to work on linux!

@ericmjonas ericmjonas mentioned this issue Mar 21, 2017
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