/
symmetry.py
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/
symmetry.py
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# -*- coding: utf-8 -*-
# Copyright 2018-2024 the orix developers
#
# This file is part of orix.
#
# orix is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# orix is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with orix. If not, see <http://www.gnu.org/licenses/>.
from __future__ import annotations
from typing import Dict, List, Optional, Tuple, Union
from diffpy.structure.spacegroups import GetSpaceGroup
import matplotlib.pyplot as plt
import numpy as np
from orix.quaternion.rotation import Rotation
from orix.vector import Vector3d
class Symmetry(Rotation):
r"""The set of rotations comprising a point group.
An object's symmetry can be characterized by the transformations
relating symmetrically-equivalent views on that object. Consider
the following shape.
.. image:: /_static/img/triad-object.png
:width: 200px
:alt: Image of an object with three-fold symmetry.
:align: center
This obviously has three-fold symmetry. If we rotated it by
:math:`\frac{2}{3}\pi` or :math:`\frac{4}{3}\pi`, the image
would be unchanged. These angles, as well as :math:`0`, or the
identity, expressed as quaternions, form a group. Applying any
operation in the group to any other results in another member of the
group.
Symmetries can consist of rotations or inversions, expressed as
improper rotations. A mirror symmetry is equivalent to a 2-fold
rotation combined with inversion.
"""
name = ""
# -------------------------- Properties -------------------------- #
@property
def order(self) -> int:
"""Return the number of elements of the group."""
return self.size
@property
def is_proper(self) -> bool:
"""Return whether this group contains only proper rotations."""
return np.all(np.equal(self.improper, 0))
@property
def subgroups(self) -> List[Symmetry]:
"""Return the list groups that are subgroups of this group."""
return [g for g in _groups if g._tuples <= self._tuples]
@property
def proper_subgroups(self) -> List[Symmetry]:
"""Return the list of proper groups that are subgroups of this
group.
"""
return [g for g in self.subgroups if g.is_proper]
@property
def proper_subgroup(self) -> Union[List[Symmetry], Symmetry]:
"""Return the largest proper group of this subgroup."""
subgroups = self.proper_subgroups
if len(subgroups) == 0:
return Symmetry(self)
else:
subgroups_sorted = sorted(subgroups, key=lambda g: g.order)
return subgroups_sorted[-1]
@property
def laue(self) -> Symmetry:
"""Return this group plus inversion."""
laue = Symmetry.from_generators(self, Ci)
laue.name = _get_laue_group_name(self.name)
return laue
@property
def laue_proper_subgroup(self) -> Symmetry:
"""Return the proper subgroup of this group plus inversion."""
return self.laue.proper_subgroup
@property
def contains_inversion(self) -> bool:
"""Return whether this group contains inversion."""
return Ci._tuples <= self._tuples
@property
def diads(self) -> Vector3d:
"""Return the diads of this symmetry."""
axis_orders = self.get_axis_orders()
diads = [ao for ao in axis_orders if axis_orders[ao] == 2]
if len(diads) == 0:
return Vector3d.empty()
else:
return Vector3d.stack(diads).flatten()
@property
def euler_fundamental_region(self) -> tuple:
r"""Return the fundamental Euler angle region of the proper
subgroup.
Returns
-------
region
Maximum Euler angles :math:`(\phi_{1, max}, \Phi_{max},
\phi_{2, max})` in degrees. No symmetry is assumed if the
proper subgroup name is not recognized.
"""
# fmt: off
angles = {
"1": (360, 180, 360), # Triclinic
"211": (360, 90, 360), # Monoclinic
"121": (360, 90, 360),
"112": (360, 180, 180),
"222": (360, 90, 180), # Orthorhombic
"4": (360, 180, 90), # Tetragonal
"422": (360, 90, 90),
"3": (360, 180, 120), # Trigonal
"312": (360, 90, 120),
"32": (360, 90, 120),
"6": (360, 180, 60), # Hexagonal
"622": (360, 90, 60),
"23": (360, 90, 180), # Cubic
"432": (360, 90, 90),
}
# fmt: on
proper_subgroup_name = self.proper_subgroup.name
if proper_subgroup_name in angles.keys():
region = angles[proper_subgroup_name]
else:
region = angles["1"]
return region
@property
def system(self) -> Union[str, None]:
"""Return which of the seven crystal systems this symmetry
belongs to.
Returns
-------
system
``None`` is returned if the symmetry name is not recognized.
"""
name = self.name
if name in ["1", "-1"]:
return "triclinic"
elif name in ["211", "121", "112", "2", "m11", "1m1", "11m", "m", "2/m"]:
return "monoclinic"
elif name in ["222", "mm2", "mmm"]:
return "orthorhombic"
elif name in ["4", "-4", "4/m", "422", "4mm", "-42m", "4/mmm"]:
return "tetragonal"
elif name in ["3", "-3", "321", "312", "32", "3m", "-3m"]:
return "trigonal"
elif name in ["6", "-6", "6/m", "622", "6mm", "-6m2", "6/mmm"]:
return "hexagonal"
elif name in ["23", "m-3", "432", "-43m", "m-3m"]:
return "cubic"
else:
return None
@property
def _tuples(self) -> set:
"""Return the differentiators of this group."""
s = Rotation(self.flatten())
tuples = set([tuple(d) for d in s._differentiators()])
return tuples
@property
def fundamental_sector(self) -> "orix.vector.FundamentalSector":
"""Return the fundamental sector describing the inverse pole
figure given by the point group name.
These sectors are taken from MTEX'
:code:`crystalSymmetry.fundamentalSector`.
"""
# Avoid circular import
from orix.vector import FundamentalSector
name = self.name
vx = Vector3d.xvector()
vy = Vector3d.yvector()
vz = Vector3d.zvector()
# Map everything on the northern hemisphere if there is an
# inversion or some symmetry operation not parallel to Z
if any(vz.angle_with(self.outer(vz)) > np.pi / 2):
n = vz
else:
n = Vector3d.empty()
# Region on the northern hemisphere depends just on the number
# of symmetry operations
if self.size > 1 + n.size:
angle = 2 * np.pi * (1 + n.size) / self.size
new_v = Vector3d.from_polar(
azimuth=[np.pi / 2, angle - np.pi / 2], polar=[np.pi / 2, np.pi / 2]
)
n = Vector3d(np.vstack([n.data, new_v.data]))
# We only set the center "by hand" for T (23), Th (m-3) and O
# (432), since the UV S2 sampling isn't uniform enough to
# produce the correct center according to MTEX
center = None
# Override normal(s) for some point groups
if name == "-1":
n = vz
elif name in ["m11", "1m1", "11m"]:
idx_min_angle = np.argmin(self.angle)
n = self[idx_min_angle].axis
if name == "m11":
n = -n
elif name == "mm2":
n = self[self.improper].axis # Mirror planes
idx = n.angle_with(-vy) < np.pi / 4
n[idx] = -n[idx]
elif name in ["321", "312", "3m", "-3m", "6m2"]:
n = n.rotate(angle=-np.pi / 6)
elif name == "-42m":
n = n.rotate(angle=-np.pi / 4)
elif name == "23":
n = Vector3d([[1, 1, 0], [1, -1, 0], [0, -1, 1], [0, 1, 1]])
# Taken from MTEX
center = Vector3d([0.707558, -0.000403, 0.706655])
elif name in ["m-3", "432"]:
n = Vector3d(np.vstack([vx.data, [0, -1, 1], [-1, 0, 1], vy.data, vz.data]))
# Taken from MTEX
center = Vector3d([0.349928, 0.348069, 0.869711])
elif name == "-43m":
n = Vector3d([[1, -1, 0], [1, 1, 0], [-1, 0, 1]])
elif name == "m-3m":
n = Vector3d(np.vstack([[1, -1, 0], [-1, 0, 1], vy.data]))
fs = FundamentalSector(n).flatten().unique()
fs._center = center
return fs
@property
def _primary_axis_order(self) -> Union[int, None]:
"""Return the order of primary rotation axis for the proper
subgroup.
Used in to map Euler angles into the fundamental region in
:meth:`~orix.quaternion.Orientation.in_euler_fundamental_region`.
Returns
-------
order
``None`` is returned if the proper subgroup name is not
recognized.
"""
# TODO: Find this dynamically
name = self.proper_subgroup.name
if name in ["1", "211", "121"]:
return 1
elif name in ["112", "222", "23"]:
return 2
elif name in ["3", "312", "32"]:
return 3
elif name in ["4", "422", "432"]:
return 4
elif name in ["6", "622"]:
return 6
else:
return None
@property
def _special_rotation(self) -> Rotation:
"""Symmetry operations of the proper subgroup different from
rotation about the c-axis.
Used in to map Euler angles into the fundamental region in
:meth:`~orix.quaternion.Orientation.in_euler_fundamental_region`.
These sectors are taken from MTEX'
:code:`Symmetry.rotation_special`.
Returns
-------
rot
The identity rotation is returned if the proper subgroup
name is not recognized.
"""
def symmetry_axis(v: Vector3d, n: int) -> Rotation:
angles = np.linspace(0, 2 * np.pi, n, endpoint=False)
return Rotation.from_axes_angles(v, angles)
# Symmetry axes
vx = Vector3d.xvector()
mirror = Vector3d((1, -1, 0))
axis110 = Vector3d((1, 1, 0))
axis111 = Vector3d((1, 1, 1))
name = self.proper_subgroup.name
if name in ["1", "211", "121"]:
# All proper operations
rot = self[~self.improper]
elif name in ["112", "3", "4", "6"]:
# Identity
rot = self[0]
elif name in ["222", "422", "622", "32"]:
# Two-fold rotation about a-axis perpendicular to c-axis
rot = symmetry_axis(-vx, 2)
elif name == "312":
# Mirror plane perpendicular to c-axis?
rot = symmetry_axis(-mirror, 2)
elif name in ["23", "432"]:
# Three-fold rotation about [111]
rot = symmetry_axis(-axis111, 3)
if name == "23":
# Combined with two-fold rotation about a-axis
rot = rot.outer(symmetry_axis(-vx, 2))
else:
# Combined with two-fold rotation about [110]
rot = rot.outer(symmetry_axis(-axis110, 2))
else:
rot = Rotation.identity((1,))
return rot.flatten()
# ------------------------ Dunder methods ------------------------ #
def __repr__(self) -> str:
data = np.array_str(self.data, precision=4, suppress_small=True)
return f"{self.__class__.__name__} {self.shape} {self.name}\n{data}"
def __and__(self, other: Symmetry) -> Symmetry:
generators = [g for g in self.subgroups if g in other.subgroups]
return Symmetry.from_generators(*generators)
def __hash__(self) -> hash:
return hash(self.name.encode() + self.data.tobytes() + self.improper.tobytes())
# ------------------------ Class methods ------------------------- #
@classmethod
def from_generators(cls, *generators: Rotation) -> Symmetry:
"""Create a Symmetry from a minimum list of generating
transformations.
Parameters
----------
*generators
An arbitrary list of constituent transformations.
Returns
-------
sym
Examples
--------
Combining a 180° rotation about [1, -1, 0] with a 4-fold
rotoinversion axis along [0, 0, 1]
>>> from orix.quaternion import Symmetry
>>> myC2 = Symmetry([(1, 0, 0, 0), (0, 0.75**0.5, -0.75**0.5, 0)])
>>> myS4 = Symmetry([(1, 0, 0, 0), (0.5**0.5, 0, 0, 0.5**0.5)])
>>> myS4.improper = [0, 1]
>>> mySymmetry = Symmetry.from_generators(myC2, myS4)
>>> mySymmetry
Symmetry (8,)
[[ 1. 0. 0. 0. ]
[ 0. 0.7071 -0.7071 0. ]
[ 0.7071 0. 0. 0.7071]
[ 0. 0. -1. 0. ]
[ 0. 1. 0. 0. ]
[-0.7071 0. 0. 0.7071]
[ 0. 0. 0. 1. ]
[ 0. -0.7071 -0.7071 0. ]]
"""
generator = cls((1, 0, 0, 0))
for g in generators:
generator = generator.outer(cls(g)).unique()
size = 1
size_new = generator.size
while size_new != size and size_new < 48:
size = size_new
generator = generator.outer(generator).unique()
size_new = generator.size
return generator
# --------------------- Other public methods --------------------- #
def get_axis_orders(self) -> Dict[Vector3d, int]:
s = self[self.angle > 0]
if s.size == 0:
return {}
return {
Vector3d(a): b + 1
for a, b in zip(*np.unique(s.axis.data, axis=0, return_counts=True))
}
def get_highest_order_axis(self) -> Tuple[Vector3d, np.ndarray]:
axis_orders = self.get_axis_orders()
if len(axis_orders) == 0:
return Vector3d.zvector(), np.inf
highest_order = max(axis_orders.values())
axes = Vector3d.stack(
[ao for ao in axis_orders if axis_orders[ao] == highest_order]
).flatten()
return axes, highest_order
def fundamental_zone(self) -> Vector3d:
from orix.vector import AxAngle, SphericalRegion
symmetry = self.antipodal
symmetry = symmetry[symmetry.angle > 0]
axes, order = symmetry.get_highest_order_axis()
if order > 6:
return Vector3d.empty()
axis = Vector3d.zvector().get_nearest(axes, inclusive=True)
r = Rotation.from_axes_angles(axis, 2 * np.pi / order)
diads = symmetry.diads
nearest_diad = axis.get_nearest(diads)
if nearest_diad.size == 0:
nearest_diad = axis.perpendicular
n1 = axis.cross(nearest_diad).unit
n2 = -(r * n1)
next_diad = r * nearest_diad
n = Vector3d.stack((n1, n2)).flatten()
sr = SphericalRegion(n.unique())
inside = symmetry[symmetry.axis < sr]
if inside.size == 0:
return sr
axes, order = inside.get_highest_order_axis()
axis = axis.get_nearest(axes)
r = Rotation.from_axes_angles(axis, 2 * np.pi / order)
nearest_diad = next_diad
n1 = axis.cross(nearest_diad).unit
n2 = -(r * n1)
n = Vector3d(np.concatenate((n.data, n1.data, n2.data)))
sr = SphericalRegion(n.unique())
return sr
def plot(
self,
orientation: "orix.quaternion.Orientation" = None,
reproject_scatter_kwargs: Optional[dict] = None,
**kwargs,
) -> plt.Figure:
"""Stereographic projection of symmetry operations.
The upper hemisphere of the stereographic projection is shown.
Vectors on the lower hemisphere are shown after reprojection
onto the upper hemisphere.
Parameters
----------
orientation
The symmetry operations are applied to this orientation
before plotting. The default value uses an orientation
optimized to show symmetry elements.
reproject_scatter_kwargs
Dictionary of keyword arguments for the reprojected scatter
points which is passed to
:meth:`~orix.plot.StereographicPlot.scatter`, which passes
these on to :meth:`matplotlib.axes.Axes.scatter`. The
default marker style for reprojected vectors is "+". Values
used for vector(s) on the visible hemisphere are used unless
another value is passed here.
**kwargs
Keyword arguments passed to
:meth:`~orix.plot.StereographicPlot.scatter`, which passes
these on to :meth:`matplotlib.axes.Axes.scatter`.
Returns
-------
fig
The created figure, returned if ``return_figure=True`` is
passed as a keyword argument.
"""
if orientation is None:
# orientation chosen to mimic stereographic projections as
# shown: http://xrayweb.chem.ou.edu/notes/symmetry.html
orientation = Rotation.from_axes_angles((-1, 8, 1), np.deg2rad(65))
if not isinstance(orientation, Rotation):
raise TypeError("Orientation must be a Rotation instance.")
orientation = self.outer(orientation)
kwargs.setdefault("return_figure", False)
return_figure = kwargs.pop("return_figure")
if reproject_scatter_kwargs is None:
reproject_scatter_kwargs = {}
reproject_scatter_kwargs.setdefault("marker", "+")
reproject_scatter_kwargs.setdefault("label", "lower")
v = orientation * Vector3d.zvector()
figure = v.scatter(
return_figure=True,
axes_labels=[r"$e_1$", r"$e_2$", None],
label="upper",
reproject=True,
reproject_scatter_kwargs=reproject_scatter_kwargs,
**kwargs,
)
# add symmetry name to figure title
figure.suptitle(f"${self.name}$")
if return_figure:
return figure
# Triclinic
C1 = Symmetry((1, 0, 0, 0))
C1.name = "1"
Ci = Symmetry([(1, 0, 0, 0), (1, 0, 0, 0)])
Ci.improper = [0, 1]
Ci.name = "-1"
# Special generators
_mirror_xy = Symmetry([(1, 0, 0, 0), (0, 0.75**0.5, -(0.75**0.5), 0)])
_mirror_xy.improper = [0, 1]
_cubic = Symmetry([(1, 0, 0, 0), (0.5, 0.5, 0.5, 0.5)])
# 2-fold rotations
C2x = Symmetry([(1, 0, 0, 0), (0, 1, 0, 0)])
C2x.name = "211"
C2y = Symmetry([(1, 0, 0, 0), (0, 0, 1, 0)])
C2y.name = "121"
C2z = Symmetry([(1, 0, 0, 0), (0, 0, 0, 1)])
C2z.name = "112"
C2 = Symmetry(C2z)
C2.name = "2"
# Mirrors
Csx = Symmetry([(1, 0, 0, 0), (0, 1, 0, 0)])
Csx.improper = [0, 1]
Csx.name = "m11"
Csy = Symmetry([(1, 0, 0, 0), (0, 0, 1, 0)])
Csy.improper = [0, 1]
Csy.name = "1m1"
Csz = Symmetry([(1, 0, 0, 0), (0, 0, 0, 1)])
Csz.improper = [0, 1]
Csz.name = "11m"
Cs = Symmetry(Csz)
Cs.name = "m"
# Monoclinic
C2h = Symmetry.from_generators(C2, Cs)
C2h.name = "2/m"
# Orthorhombic
D2 = Symmetry.from_generators(C2z, C2x, C2y)
D2.name = "222"
C2v = Symmetry.from_generators(C2x, Csz)
C2v.name = "mm2"
D2h = Symmetry.from_generators(Csz, Csx, Csy)
D2h.name = "mmm"
# 4-fold rotations
C4x = Symmetry(
[
(1, 0, 0, 0),
(0.5**0.5, 0.5**0.5, 0, 0),
(0, 1, 0, 0),
(-(0.5**0.5), 0.5**0.5, 0, 0),
]
)
C4y = Symmetry(
[
(1, 0, 0, 0),
(0.5**0.5, 0, 0.5**0.5, 0),
(0, 0, 1, 0),
(-(0.5**0.5), 0, 0.5**0.5, 0),
]
)
C4z = Symmetry(
[
(1, 0, 0, 0),
(0.5**0.5, 0, 0, 0.5**0.5),
(0, 0, 0, 1),
(-(0.5**0.5), 0, 0, 0.5**0.5),
]
)
C4 = Symmetry(C4z)
C4.name = "4"
# Tetragonal
S4 = Symmetry(C4)
S4.improper = [0, 1, 0, 1]
S4.name = "-4"
C4h = Symmetry.from_generators(C4, Cs)
C4h.name = "4/m"
D4 = Symmetry.from_generators(C4, C2x, C2y)
D4.name = "422"
C4v = Symmetry.from_generators(C4, Csx)
C4v.name = "4mm"
D2d = Symmetry.from_generators(D2, _mirror_xy)
D2d.name = "-42m"
D4h = Symmetry.from_generators(C4h, Csx, Csy)
D4h.name = "4/mmm"
# 3-fold rotations
C3x = Symmetry([(1, 0, 0, 0), (0.5, 0.75**0.5, 0, 0), (-0.5, 0.75**0.5, 0, 0)])
C3y = Symmetry([(1, 0, 0, 0), (0.5, 0, 0.75**0.5, 0), (-0.5, 0, 0.75**0.5, 0)])
C3z = Symmetry([(1, 0, 0, 0), (0.5, 0, 0, 0.75**0.5), (-0.5, 0, 0, 0.75**0.5)])
C3 = Symmetry(C3z)
C3.name = "3"
# Trigonal
S6 = Symmetry.from_generators(C3, Ci)
S6.name = "-3"
D3x = Symmetry.from_generators(C3, C2x)
D3x.name = "321"
D3y = Symmetry.from_generators(C3, C2y)
D3y.name = "312"
D3 = Symmetry(D3x)
D3.name = "32"
C3v = Symmetry.from_generators(C3, Csx)
C3v.name = "3m"
D3d = Symmetry.from_generators(S6, Csx)
D3d.name = "-3m"
# Hexagonal
C6 = Symmetry.from_generators(C3, C2)
C6.name = "6"
C3h = Symmetry.from_generators(C3, Cs)
C3h.name = "-6"
C6h = Symmetry.from_generators(C6, Cs)
C6h.name = "6/m"
D6 = Symmetry.from_generators(C6, C2x, C2y)
D6.name = "622"
C6v = Symmetry.from_generators(C6, Csx)
C6v.name = "6mm"
D3h = Symmetry.from_generators(C3, C2y, Csz)
D3h.name = "-6m2"
D6h = Symmetry.from_generators(D6, Csz)
D6h.name = "6/mmm"
# Cubic
T = Symmetry.from_generators(C2, _cubic)
T.name = "23"
Th = Symmetry.from_generators(T, Ci)
Th.name = "m-3"
O = Symmetry.from_generators(C4, _cubic, C2x)
O.name = "432"
Td = Symmetry.from_generators(T, _mirror_xy)
Td.name = "-43m"
Oh = Symmetry.from_generators(O, Ci)
Oh.name = "m-3m"
# Collections of groups for convenience
# fmt: off
_groups = [
# Schoenflies Crystal system International Laue class Proper point group
C1, # Triclinic 1 -1 1
Ci, # Triclinic -1 -1 1
C2x, # Monoclinic 211 2/m 211
C2y, # Monoclinic 121 2/m 121
C2z, # Monoclinic 112 2/m 112
Csx, # Monoclinic m11 2/m 1
Csy, # Monoclinic 1m1 2/m 1
Csz, # Monoclinic 11m 2/m 1
C2h, # Monoclinic 2/m 2/m 112
D2, # Orthorhombic 222 mmm 222
C2v, # Orthorhombic mm2 mmm 211
D2h, # Orthorhombic mmm mmm 222
C4, # Tetragonal 4 4/m 4
S4, # Tetragonal -4 4/m 112
C4h, # Tetragonal 4/m 4/m 4
D4, # Tetragonal 422 4/mmm 422
C4v, # Tetragonal 4mm 4/mmm 4
D2d, # Tetragonal -42m 4/mmm 222
D4h, # Tetragonal 4/mmm 4/mmm 422
C3, # Trigonal 3 -3 3
S6, # Trigonal -3 -3 3
D3x, # Trigonal 321 -3m 32
D3y, # Trigonal 312 -3m 312
D3, # Trigonal 32 -3m 32
C3v, # Trigonal 3m -3m 3
D3d, # Trigonal -3m -3m 32
C6, # Hexagonal 6 6/m 6
C3h, # Hexagonal -6 6/m 6
C6h, # Hexagonal 6/m 6/m 622
D6, # Hexagonal 622 6/mmm 622
C6v, # Hexagonal 6mm 6/mmm 6
D3h, # Hexagonal -6m2 6/mmm 312
D6h, # Hexagonal 6/mmm 6/mmm 622
T, # Cubic 23 m-3 23
Th, # Cubic m-3 m-3 23
O, # Cubic 432 m-3m 432
Td, # Cubic -43m m-3m 23
Oh, # Cubic m-3m m-3m 432
]
# fmt: on
_proper_groups = [C1, C2, C2x, C2y, C2z, D2, C4, D4, C3, D3x, D3y, D3, C6, D6, T, O]
def get_distinguished_points(s1: Symmetry, s2: Symmetry = C1) -> Rotation:
"""Return points symmetrically equivalent to identity with respect
to ``s1`` and ``s2``.
Parameters
----------
s1
First symmetry.
s2
Second symmetry.
Returns
-------
distinguished_points
Distinguished points.
"""
distinguished_points = s1.outer(s2).antipodal.unique(antipodal=False)
return distinguished_points[distinguished_points.angle > 0]
spacegroup2pointgroup_dict = {
"PG1": {"proper": C1, "improper": C1},
"PG1bar": {"proper": C1, "improper": Ci},
"PG2": {"proper": C2, "improper": C2},
"PGm": {"proper": C2, "improper": Cs},
"PG2/m": {"proper": C2, "improper": C2h},
"PG222": {"proper": D2, "improper": D2},
"PGmm2": {"proper": C2, "improper": C2v},
"PGmmm": {"proper": D2, "improper": D2h},
"PG4": {"proper": C4, "improper": C4},
"PG4bar": {"proper": C4, "improper": S4},
"PG4/m": {"proper": C4, "improper": C4h},
"PG422": {"proper": D4, "improper": D4},
"PG4mm": {"proper": C4, "improper": C4v},
"PG4bar2m": {"proper": D4, "improper": D2d},
"PG4barm2": {"proper": D4, "improper": D2d},
"PG4/mmm": {"proper": D4, "improper": D4h},
"PG3": {"proper": C3, "improper": C3},
"PG3bar": {"proper": C3, "improper": S6}, # Improper also known as C3i
"PG312": {"proper": D3, "improper": D3},
"PG321": {"proper": D3, "improper": D3},
"PG3m1": {"proper": C3, "improper": C3v},
"PG31m": {"proper": C3, "improper": C3v},
"PG3m": {"proper": C3, "improper": C3v},
"PG3bar1m": {"proper": D3, "improper": D3d},
"PG3barm1": {"proper": D3, "improper": D3d},
"PG3barm": {"proper": D3, "improper": D3d},
"PG6": {"proper": C6, "improper": C6},
"PG6bar": {"proper": C6, "improper": C3h},
"PG6/m": {"proper": C6, "improper": C6h},
"PG622": {"proper": D6, "improper": D6},
"PG6mm": {"proper": C6, "improper": C6v},
"PG6barm2": {"proper": D6, "improper": D3h},
"PG6bar2m": {"proper": D6, "improper": D3h},
"PG6/mmm": {"proper": D6, "improper": D6h},
"PG23": {"proper": T, "improper": T},
"PGm3bar": {"proper": T, "improper": Th},
"PG432": {"proper": O, "improper": O},
"PG4bar3m": {"proper": T, "improper": Td},
"PGm3barm": {"proper": O, "improper": Oh},
}
def get_point_group(space_group_number: int, proper: bool = False) -> Symmetry:
"""Map a space group number to its (proper) point group.
Parameters
----------
space_group_number
Between 1 and 231.
proper
Whether to return the point group with proper rotations only
(``True``), or just the point group (``False``). Default is
``False``.
Returns
-------
point_group
One of the 11 proper or 32 point groups.
Examples
--------
>>> from orix.quaternion.symmetry import get_point_group
>>> pgOh = get_point_group(225)
>>> pgOh.name
'm-3m'
>>> pgO = get_point_group(225, proper=True)
>>> pgO.name
'432'
"""
spg = GetSpaceGroup(space_group_number)
pgn = spg.point_group_name
if proper:
return spacegroup2pointgroup_dict[pgn]["proper"]
else:
return spacegroup2pointgroup_dict[pgn]["improper"]
# Point group alias mapping. This is needed because in EDAX TSL OIM
# Analysis 7.2, e.g. point group 432 is entered as 43.
# Used when reading a phase's point group from an EDAX ANG file header
point_group_aliases = {
"121": ["20"],
"2/m": ["2"],
"222": ["22"],
"422": ["42"],
"432": ["43"],
"m-3m": ["m3m"],
}
def _get_laue_group_name(name: str) -> Union[str, None]:
if name in ["1", "-1"]:
return "-1"
elif name in ["2", "211", "121", "112", "m11", "1m1", "11m", "2/m"]:
return "2/m"
elif name in ["222", "mm2", "mmm"]:
return "mmm"
elif name in ["4", "-4", "4/m"]:
return "4/m"
elif name in ["422", "4mm", "-42m", "4/mmm"]:
return "4/mmm"
elif name in ["3", "-3"]:
return "-3"
elif name in ["321", "312", "32", "3m", "-3m"]:
return "-3m"
elif name in ["6", "-6", "6/m"]:
return "6/m"
elif name in ["6mm", "-6m2", "6/mmm", "622"]:
return "6/mmm"
elif name in ["23", "m-3"]:
return "m-3"
elif name in ["432", "-43m", "m-3m"]:
return "m-3m"
else:
return None
def _get_unique_symmetry_elements(
sym1: Symmetry, sym2: Symmetry, check_subgroups: bool = False
) -> Symmetry:
"""Compute the unique symmetry elements between two symmetries,
defined as ``sym1.outer(sym2).unique()``.
To improve computation speed some checks are performed prior to
explicit computation of the unique elements. If ``sym1 == sym2``
then the unique elements are just the symmetries themselves, and so
are returned. If ``sym2`` is a :attr:`Symmetry.subgroup`` of
``sym1`` then the unique symmetry elements will be identical to
``sym1``, in this case ``sym1`` is returned. This check is made if
``check_subgroups=True``. As the symmetry order matters, this may
not be the case if ``sym1`` is a subgroup of ``sym2``, so this is
not checked here.
If no relationship is determined between the symmetries then the
unique symmetry elements are explicitly computed, as described
above.
Parameters
----------
sym1
sym2
check_subgroups
Whether to check if ``sym2`` is a subgroup of ``sym1``. Default
is ``False``.
Returns
-------
unique
The unique symmetry elements.
"""
if sym1 == sym2:
return sym1
if check_subgroups:
# test whether sym2 is a subgroup of sym1
sym2_is_sg_sym1 = True if sym2 in sym1.subgroups else False
if sym2_is_sg_sym1:
return sym1
# default to explicit computation of the unique symmetry elements
return sym1.outer(sym2).unique()