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symbolic_shape_infer.py
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symbolic_shape_infer.py
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# Copyright (c) Microsoft Corporation. All rights reserved.
# Licensed under the MIT License.
# -*- coding: UTF-8 -*-
import argparse
import numpy as np
import onnx
import sys
from onnx import helper, numpy_helper, shape_inference
import sympy
from packaging import version
assert version.parse(onnx.__version__) >= version.parse("1.5.0") # need at least opset 10 for MatMulInteger shape inference
def get_attribute(node, attr_name, default_value=None):
found = [attr for attr in node.attribute if attr.name == attr_name]
if found:
return helper.get_attribute_value(found[0])
return default_value
def get_shape_from_type_proto(type_proto):
return [getattr(i, i.WhichOneof('value')) if type(i.WhichOneof('value')) == str else None for i in type_proto.tensor_type.shape.dim]
def get_shape_from_sympy_shape(sympy_shape):
return [None if i is None else (int(i) if is_literal(i) or i.is_number else str(i)) for i in sympy_shape]
def is_literal(dim):
return type(dim) in [int, np.int64, sympy.Integer]
def handle_negative_axis(axis, rank):
assert axis < rank and axis >= -rank
return axis if axis >= 0 else rank + axis
def get_opset(mp, domain=['', 'onnx']):
if type(domain) != list:
domain = [domain]
for opset in mp.opset_import:
if opset.domain in domain:
return opset.version
return None
def as_scalar(x):
if type(x) == list:
assert len(x) == 1
return x[0]
elif type(x) == np.ndarray:
return np.asscalar(x)
else:
return x
def sympy_reduce_product(x):
if type(x) == list:
value = sympy.Integer(1)
for v in x:
value = value * v
else:
value = x
return value
class SymbolicShapeInference:
def __init__(self, auto_merge, verbose):
self.dispatcher_ = {
'Add' : self._infer_binary_ops,
'AveragePool' : self._infer_Pool,
'Cast' : self._infer_Cast,
'CategoryMapper' : self._infer_CategoryMapper,
'Compress' : self._infer_Compress,
'Concat' : self._infer_Concat,
'ConstantOfShape' : self._infer_ConstantOfShape,
'Conv' : self._infer_Conv,
'CumSum' : self._pass_on_shape_and_type,
'Div' : self._infer_binary_ops,
'Expand' : self._infer_Expand,
'Gather' : self._infer_Gather,
'GatherElements' : self._infer_GatherElements,
'Loop' : self._infer_Loop,
'MatMulInteger16' : self._infer_MatMulInteger,
'MaxPool' : self._infer_Pool,
'Max' : self._infer_binary_ops,
'Min' : self._infer_binary_ops,
'Mul' : self._infer_binary_ops,
'NonMaxSuppression' : self._infer_NonMaxSuppression,
'NonZero' : self._infer_NonZero,
'OneHot' : self._infer_OneHot,
'Pad' : self._infer_Pad,
'Range' : self._infer_Range,
'ReduceProd' : self._infer_ReduceProd,
'Reshape' : self._infer_Reshape,
'Resize' : self._infer_Resize,
'Round' : self._pass_on_shape_and_type,
'Scan' : self._infer_Scan,
'ScatterElements' : self._infer_ScatterElements,
'Shape' : self._infer_Shape,
'Size' : self._infer_Size,
'Slice' : self._infer_Slice,
'Split' : self._infer_Split,
'Squeeze' : self._infer_Squeeze,
'Sub' : self._infer_binary_ops,
'Tile' : self._infer_Tile,
'TopK' : self._infer_TopK,
'Unsqueeze' : self._infer_Unsqueeze}
self.run_ = True
self.suggested_merge_ = {}
self.symbolic_dims_ = {}
self.auto_merge_ = auto_merge
self.verbose_ = verbose
def _add_suggested_merge(self, symbols):
assert all([type(s) == str and s in self.symbolic_dims_ for s in symbols])
symbols = set(symbols)
for k,v in self.suggested_merge_.items():
if k in symbols:
symbols.remove(k)
symbols.add(v)
map_to = None
for s in symbols:
if type(self.symbolic_dims_[s]) == sympy.Symbol:
map_to = s
if not map_to:
if self.verbose_ > 0:
print('Potential unsafe merge between symbolic expressions: ({})'.format(','.join(symbols)))
map_to = symbols.pop() # force merge when unable to determine
for s in symbols:
if s == map_to:
continue
self.suggested_merge_[s] = map_to
for k,v in self.suggested_merge_.items():
if v == s:
self.suggested_merge_[k] = map_to
def _apply_suggested_merge_to_graph_input(self):
if not self.suggested_merge_:
return
for i in self.out_mp_.graph.input:
for d in i.type.tensor_type.shape.dim:
if d.dim_param in self.suggested_merge_:
d.dim_param = self.suggested_merge_[d.dim_param]
def _preprocess(self, in_mp):
out_mp = onnx.ModelProto()
out_mp.CopyFrom(in_mp)
out_mp.graph.ClearField('node')
self.out_mp_ = out_mp
defined = set([i.name for i in list(in_mp.graph.input) + list(in_mp.graph.initializer)])
pending_nodes = []
# returns True if no more ready nodes
def _insert_ready_nodes():
ready_nodes = [pn for pn in pending_nodes if all([i in defined for i in pn.input if i])]
for rn in ready_nodes:
self.out_mp_.graph.node.add().CopyFrom(rn)
for o in rn.output:
defined.add(o)
pending_nodes.remove(rn)
return not ready_nodes
# constant op -> initializer, topological sort
for in_n in in_mp.graph.node:
if in_n.op_type == 'Constant':
t = get_attribute(in_n, 'value')
t.name = in_n.output[0]
self.out_mp_.graph.initializer.add().CopyFrom(t)
defined.add(t.name)
else:
pending_nodes.append(in_n)
_insert_ready_nodes()
while pending_nodes:
if _insert_ready_nodes():
break
if pending_nodes and self.verbose_ > 0:
print('SymbolicShapeInference: orphaned nodes discarded: ')
print(*[n.op_type + ': ' + n.output[0] for n in pending_nodes], sep='\n')
self.initializers_ = dict([(i.name, i) for i in self.out_mp_.graph.initializer])
self.known_vi_ = dict([(i.name, i) for i in list(self.out_mp_.graph.input)])
self.known_vi_.update(dict([(i.name, helper.make_tensor_value_info(i.name, i.data_type, list(i.dims))) for i in self.out_mp_.graph.initializer]))
def _merge_symbols(self, dims):
if not all([type(d) == str for d in dims]):
if self.auto_merge_:
assert len(dims) == 2 # only allow symbol->int merge in binary ops for now
is_int = [int(type(d) == int) for d in dims]
assert sum(is_int) == 1
int_dim = is_int.index(1)
if self.verbose_ > 0:
print('dim {} has been merged with value {}'.format(dims[1 - int_dim], dims[int_dim]))
return dims[int_dim]
else:
return None
if all([d == dims[0] for d in dims]):
return dims[0]
merged = [self.suggested_merge_[d] if d in self.suggested_merge_ else d for d in dims]
if all([d == merged[0] for d in merged]):
assert merged[0] in self.symbolic_dims_
return merged[0]
else:
return None
# broadcast from right to left, and merge symbolic dims if needed
def _broadcast_shapes(self, shape1, shape2):
new_shape = []
rank1 = len(shape1)
rank2 = len(shape2)
new_rank = max(rank1, rank2)
for i in range(new_rank):
dim1 = shape1[rank1 - 1 - i] if i < rank1 else 1
dim2 = shape2[rank2 - 1 - i] if i < rank2 else 1
if dim1 == 1 or dim1 == dim2:
new_dim = dim2
elif dim2 == 1:
new_dim = dim1
else:
new_dim = self._merge_symbols([dim1, dim2])
if not new_dim:
print('unsupported broadcast between ' + str(dim1) + ' ' + str(dim2))
new_shape = [new_dim] + new_shape
return new_shape
def _get_shape(self, node, idx):
name = node.input[idx]
if name in self.known_vi_:
return get_shape_from_type_proto(self.known_vi_[name].type)
else:
assert name in self.initializers_
return list(self.initializers_[name].dims)
def _get_shape_rank(self, node, idx):
return len(self._get_shape(node, idx))
def _get_sympy_shape(self, node, idx):
sympy_shape = []
for d in self._get_shape(node, idx):
if type(d) == str:
sympy_shape.append(self.symbolic_dims_[d] if d in self.symbolic_dims_ else sympy.Symbol(d, integer=True))
else:
assert None != d
sympy_shape.append(d)
return sympy_shape
def _get_value(self, node, idx):
name = node.input[idx]
assert name in self.sympy_data_ or name in self.initializers_
return self.sympy_data_[name] if name in self.sympy_data_ else numpy_helper.to_array(self.initializers_[name])
def _try_get_value(self, node, idx):
if idx >= len(node.input):
return None
name = node.input[idx]
if name in self.sympy_data_ or name in self.initializers_:
return self._get_value(node, idx)
return None
def _update_computed_dims(self, new_sympy_shape):
for i, new_dim in enumerate(new_sympy_shape):
if not is_literal(new_dim) and not type(new_dim) == str:
str_dim = str(new_dim)
if str_dim in self.suggested_merge_:
new_sympy_shape[i] = self.symbolic_dims_[self.suggested_merge_[str_dim]]
else:
# add new_dim if it's a computational expression
if not str(new_dim) in self.symbolic_dims_:
self.symbolic_dims_[str(new_dim)] = new_dim
def _onnx_infer_single_node(self, node):
# skip onnx shape inference for Scan/Loop
skip_infer = node.op_type in ['Scan', 'Loop']
if not skip_infer:
# run single node inference with self.known_vi_ shapes
# note that inference rely on initializer values is not handled
# as we don't copy initializer weights to tmp_graph for inference speed purpose
tmp_graph = helper.make_graph([node],
'tmp',
[self.known_vi_[i] for i in node.input if i],
[helper.make_tensor_value_info(i, onnx.TensorProto.UNDEFINED, None) for i in node.output])
self.tmp_mp_.graph.CopyFrom(tmp_graph)
self.tmp_mp_ = shape_inference.infer_shapes(self.tmp_mp_)
for i_o in range(len(node.output)):
o = node.output[i_o]
vi = self.out_mp_.graph.value_info.add()
if not skip_infer:
vi.CopyFrom(self.tmp_mp_.graph.output[i_o])
self.known_vi_[o] = vi
def _onnx_infer_subgraph(self, node, subgraph):
if self.verbose_ > 2:
print('Inferencing subgraph of node {} with output({}...): {}'.format(node.name, node.output[0], node.op_type))
# node inputs are not passed directly to the subgraph
# it's up to the node dispatcher to prepare subgraph input
# for example, with Scan/Loop, subgraph input shape would be trimmed from node input shape
# besides, inputs in subgraph could shadow implicit inputs
subgraph_inputs = set([i.name for i in list(subgraph.initializer) + list(subgraph.input)])
subgraph_implicit_input = set()
for sn in subgraph.node:
subgraph_implicit_input.update([i for i in sn.input if i in self.known_vi_ and i not in subgraph_inputs])
tmp_graph = helper.make_graph(list(subgraph.node),
'tmp',
list(subgraph.input) + [self.known_vi_[i] for i in subgraph_implicit_input],
[helper.make_tensor_value_info(i.name, onnx.TensorProto.UNDEFINED, None) for i in subgraph.output])
tmp_graph.initializer.extend([i for i in self.out_mp_.graph.initializer if i.name in subgraph_implicit_input])
tmp_graph.initializer.extend(subgraph.initializer)
self.tmp_mp_.graph.CopyFrom(tmp_graph)
symbolic_shape_inference = SymbolicShapeInference(self.auto_merge_, self.verbose_)
all_shapes_inferred = False
symbolic_shape_inference._preprocess(self.tmp_mp_)
symbolic_shape_inference.suggested_merge_ = self.suggested_merge_.copy()
while symbolic_shape_inference.run_:
all_shapes_inferred = symbolic_shape_inference._infer_impl(self.tmp_mp_)
symbolic_shape_inference._update_output_from_vi()
subgraph.ClearField('input')
subgraph.input.extend(symbolic_shape_inference.out_mp_.graph.input[:len(node.input)])
subgraph.ClearField('output')
subgraph.output.extend(symbolic_shape_inference.out_mp_.graph.output)
# for new symbolic dims from subgraph output, add to main graph symbolic dims
subgraph_shapes = [get_shape_from_type_proto(o.type) for o in symbolic_shape_inference.out_mp_.graph.output]
subgraph_new_symbolic_dims = set([d for s in subgraph_shapes if s for d in s if type(d) == str and not d in self.symbolic_dims_])
self.symbolic_dims_.update({d:symbolic_shape_inference.symbolic_dims_[d] for d in subgraph_new_symbolic_dims})
def _get_int_values(self, node, broadcast=False):
values = [self._try_get_value(node, i) for i in range(len(node.input))]
if all([v is not None for v in values]):
# some shape compute is in floating point, cast to int for sympy
for i,v in enumerate(values):
if type(v) != np.ndarray:
continue
assert len(v.shape) <= 1
if len(v.shape) == 0:
new_v = int(np.asscalar(v))
else:
assert len(v.shape) == 1
new_v = [int(vv) for vv in v]
values[i] = new_v
values_len = [len(v) if type(v) == list else 0 for v in values]
max_len = max(values_len)
if max_len >= 1 and broadcast:
# broadcast
for i,v in enumerate(values):
if v is None:
continue # don't broadcast if value is unknown
if type(v) == list:
if len(v) < max_len:
values[i] = v*max_len
else:
assert len(v) == max_len
else:
values[i] = [v]*max_len
return values
def _compute_on_sympy_data(self, node, op_func):
assert len(node.output) == 1
values = self._get_int_values(node, broadcast=True)
if all([v is not None for v in values]):
is_list = [type(v) == list for v in values]
as_list = any(is_list)
if as_list:
self.sympy_data_[node.output[0]] = [op_func(vs) for vs in zip(*values)]
else:
self.sympy_data_[node.output[0]] = op_func(values)
def _pass_on_sympy_data(self, node):
assert len(node.input) == 1 or node.op_type == 'Reshape'
self._compute_on_sympy_data(node, lambda x: x[0])
def _pass_on_shape_and_type(self, node):
vi = self.known_vi_[node.output[0]]
vi.CopyFrom(helper.make_tensor_value_info(node.output[0],
self.known_vi_[node.input[0]].type.tensor_type.elem_type,
self._get_shape(node, 0)))
def _new_symbolic_dim_from_output(self, node, out_idx=0, dim=0):
new_dim = '{}{}_o{}_d{}'.format(node.op_type, list(self.out_mp_.graph.node).index(node), out_idx, dim)
if new_dim in self.suggested_merge_:
new_dim = str(self.suggested_merge_[new_dim])
else:
self.symbolic_dims_[new_dim] = sympy.Symbol(new_dim, integer=True)
return new_dim
def _compute_conv_pool_shape(self, node):
sympy_shape = self._get_sympy_shape(node, 0)
if len(node.input) > 1:
W_shape = self._get_sympy_shape(node, 1)
rank = len(W_shape) - 2 # number of spatial axes
kernel_shape = W_shape[-rank:]
sympy_shape[1] = W_shape[0]
else:
W_shape = None
kernel_shape = get_attribute(node, 'kernel_shape')
rank = len(kernel_shape)
assert len(sympy_shape) == rank + 2
# only need to symbolic shape inference if input has symbolic dims in spatial axes
is_symbolic_dims = [not is_literal(i) for i in sympy_shape[-rank:]]
if not any(is_symbolic_dims):
sympy_shape[-rank:] = [sympy.Integer(d) for d in get_shape_from_type_proto(self.known_vi_[node.output[0]].type)[-rank:]]
return sympy_shape
dilations = get_attribute(node, 'dilations', [1]*rank)
strides = get_attribute(node, 'strides', [1]*rank)
effective_kernel_shape = [(k - 1) * d + 1 for k, d in zip(kernel_shape, strides)]
pads = get_attribute(node, 'pads')
if pads is None:
pads = [0]*(2*rank)
auto_pad = get_attribute(node, 'auto_pad', b'NOTSET').decode('utf-8')
if auto_pad != 'VALID' and auto_pad != 'NOTSET':
try:
residual = [sympy.Mod(d, s) for d, s in zip(sympy_shape[-rank:], strides)]
total_pads = [max(0, (k - s) if r == 0 else (k - r)) for k, s, r in zip(effective_kernel_shape, strides, residual)]
except TypeError: # sympy may throw TypeError: cannot determine truth value of Relational
total_pads = [max(0, (k - s)) for k, s in zip(effective_kernel_shape, strides)] # assuming no residual if sympy throws error
else:
total_pads = [0]*rank
else:
assert len(pads) == 2*rank
total_pads = [p1 + p2 for p1, p2 in zip(pads[:rank], pads[rank:])]
ceil_mode = get_attribute(node, 'ceil_mode', 0)
for i in range(rank):
effective_input_size = sympy_shape[-rank + i] + total_pads[i]
if ceil_mode:
strided_kernel_positions = sympy.ceiling((effective_input_size - effective_kernel_shape[i]) / strides[i])
else:
strided_kernel_positions = (effective_input_size - effective_kernel_shape[i]) // strides[i]
sympy_shape[-rank + i] = strided_kernel_positions + 1
return sympy_shape
def _infer_binary_ops(self, node):
funcs = {'Add' : lambda l: l[0] + l[1],
'Div' : lambda l: l[0] // l[1], # integer div in sympy
'Max' : lambda l: sympy.Max(l[0], l[1]),
'Min' : lambda l: sympy.Min(l[0], l[1]),
'Mul' : lambda l: l[0] * l[1],
'Sub' : lambda l: l[0] - l[1]}
assert node.op_type in funcs
self._compute_on_sympy_data(node, funcs[node.op_type])
def _infer_Cast(self, node):
self._pass_on_sympy_data(node)
def _infer_CategoryMapper(self, node):
input_type = self.known_vi_[node.input[0]].type.tensor_type.elem_type
if input_type == onnx.TensorProto.STRING:
output_type = onnx.TensorProto.INT64
else:
output_type = onnx.TensorProto.STRING
vi = self.known_vi_[node.output[0]]
vi.CopyFrom(helper.make_tensor_value_info(node.output[0],
output_type,
self._get_shape(node, 0)))
def _infer_Compress(self, node):
input_shape = self._get_shape(node, 0)
# create a new symbolic dimension for Compress output
compress_len = self._new_symbolic_dim_from_output(node)
axis = get_attribute(node, 'axis')
if axis == None:
# when axis is not specified, input is flattened before compress so output is 1D
output_shape = [compress_len]
else:
output_shape = input_shape
output_shape[handle_negative_axis(axis, len(input_shape))] = compress_len
vi = self.known_vi_[node.output[0]]
vi.CopyFrom(helper.make_tensor_value_info(node.output[0], self.known_vi_[node.input[0]].type.tensor_type.elem_type, output_shape))
def _infer_Concat(self, node):
if any([i in self.sympy_data_ for i in node.input]):
values = self._get_int_values(node)
if all([v is not None for v in values]):
assert 0 == get_attribute(node, 'axis')
self.sympy_data_[node.output[0]] = []
for i in range(len(node.input)):
value = values[i]
if type(value) == list:
self.sympy_data_[node.output[0]].extend(value)
else:
self.sympy_data_[node.output[0]].append(value)
sympy_shape = self._get_sympy_shape(node, 0)
axis = handle_negative_axis(get_attribute(node, 'axis'), len(sympy_shape))
for i_idx in range(1, len(node.input)):
sympy_shape[axis] = sympy_shape[axis] + self._get_sympy_shape(node, i_idx)[axis]
self._update_computed_dims(sympy_shape)
# merge symbolic dims for non-concat axes
for d in range(len(sympy_shape)):
if d == axis:
continue
dims = [self._get_shape(node, i_idx)[d] for i_idx in range(len(node.input))]
if all([d == dims[0] for d in dims]):
continue
merged = self._merge_symbols(dims)
if type(merged) == str:
sympy_shape[d] = self.symbolic_dims_[merged] if merged else None
else:
sympy_shape[d] = merged
vi = self.known_vi_[node.output[0]]
vi.CopyFrom(helper.make_tensor_value_info(node.output[0], self.known_vi_[node.input[0]].type.tensor_type.elem_type, get_shape_from_sympy_shape(sympy_shape)))
def _infer_Conv(self, node):
sympy_shape = self._compute_conv_pool_shape(node)
self._update_computed_dims(sympy_shape)
vi = self.known_vi_[node.output[0]]
vi.CopyFrom(helper.make_tensor_value_info(node.output[0], vi.type.tensor_type.elem_type, get_shape_from_sympy_shape(sympy_shape)))
def _infer_ConstantOfShape(self, node):
sympy_shape = self._get_int_values(node)[0]
if sympy_shape is not None:
if type(sympy_shape) != list:
sympy_shape = [sympy_shape]
vi = self.known_vi_[node.output[0]]
vi.CopyFrom(helper.make_tensor_value_info(node.output[0],
vi.type.tensor_type.elem_type,
get_shape_from_sympy_shape(sympy_shape)))
def _infer_Expand(self, node):
expand_to_shape = self._try_get_value(node, 1)
if expand_to_shape is not None:
input_shape = self._get_shape(node, 0)
target_shape = get_shape_from_sympy_shape(expand_to_shape)
new_shape = self._broadcast_shapes(input_shape, target_shape)
vi = self.known_vi_[node.output[0]]
vi.CopyFrom(helper.make_tensor_value_info(node.output[0], self.known_vi_[node.input[0]].type.tensor_type.elem_type, new_shape))
def _infer_Gather(self, node):
data_shape = self._get_shape(node, 0)
axis = handle_negative_axis(get_attribute(node, 'axis', 0), len(data_shape))
indices_shape = self._get_shape(node, 1)
vi = self.known_vi_[node.output[0]]
vi.CopyFrom(helper.make_tensor_value_info(node.output[0],
vi.type.tensor_type.elem_type,
data_shape[:axis] + indices_shape + data_shape[axis+1:]))
if node.input[0] in self.sympy_data_:
assert 0 == get_attribute(node, 'axis', 0) # only handle 1D sympy compute
idx = self._get_value(node, 1)
data = self.sympy_data_[node.input[0]]
if type(data) == list:
if type(idx) == np.ndarray and len(idx.shape) == 1:
self.sympy_data_[node.output[0]] = [data[int(i)] for i in idx]
else:
self.sympy_data_[node.output[0]] = data[int(idx)]
else:
assert idx == 0
self.sympy_data_[node.output[0]] = data
def _infer_GatherElements(self, node):
indices_shape = self._get_shape(node, 1)
vi = self.known_vi_[node.output[0]]
vi.CopyFrom(helper.make_tensor_value_info(node.output[0],
self.known_vi_[node.input[0]].type.tensor_type.elem_type,
indices_shape))
def _infer_Loop(self, node):
subgraph = get_attribute(node, 'body')
assert len(subgraph.input) == len(node.input)
for i, si in enumerate(subgraph.input):
subgraph_name = si.name
si.CopyFrom(self.known_vi_[node.input[i]])
si.name = subgraph_name
self._onnx_infer_subgraph(node, subgraph)
# create a new symbolic dimension for iteration dependent dimension
loop_iter_dim = self._new_symbolic_dim_from_output(node)
num_loop_carried = len(node.input) - 2
for i in range(len(node.output)):
vi = self.known_vi_[node.output[i]]
vi.CopyFrom(subgraph.output[i + 1]) # first subgraph output is condition, not in node output
if i >= num_loop_carried:
vi_dim = vi.type.tensor_type.shape.dim
if len(vi_dim) > 0:
vi_dim[0].dim_param = loop_iter_dim
else:
vi_dim.add().dim_param = loop_iter_dim
vi.name = node.output[i]
def _infer_MatMulInteger(self, node):
lhs_shape = self._get_shape(node, 0)
rhs_shape = self._get_shape(node, 1)
lhs_rank = len(lhs_shape)
rhs_rank = len(rhs_shape)
assert lhs_rank > 0 and rhs_rank > 0
if lhs_rank == 1 and rhs_rank == 1:
new_shape = []
elif lhs_rank == 1:
new_shape = rhs_shape[:-2] + [rhs_shape[-1]]
elif rhs_rank == 1:
new_shape = lhs_shape[:-1]
else:
new_shape = self._broadcast_shapes(lhs_shape[:-2], rhs_shape[:-2]) + [lhs_shape[-2]] + [rhs_shape[-1]]
vi = self.known_vi_[node.output[0]]
vi.CopyFrom(helper.make_tensor_value_info(node.output[0], onnx.TensorProto.INT32, new_shape))
def _infer_NonMaxSuppression(self, node):
selected = self._new_symbolic_dim_from_output(node)
vi = self.known_vi_[node.output[0]]
vi.CopyFrom(helper.make_tensor_value_info(node.output[0], onnx.TensorProto.INT64, [selected, 3]))
def _infer_NonZero(self, node):
input_rank = self._get_shape_rank(node, 0)
# create a new symbolic dimension for NonZero output
nz_len = self._new_symbolic_dim_from_output(node, 0, 1)
vi = self.known_vi_[node.output[0]]
vi.CopyFrom(helper.make_tensor_value_info(node.output[0], vi.type.tensor_type.elem_type, [input_rank, nz_len]))
def _infer_OneHot(self, node):
shape = self._get_shape(node, 0)
axis = get_attribute(node, 'axis', -1)
axis = handle_negative_axis(axis, len(shape)+1)
new_shape = shape[:axis] + [self._new_symbolic_dim_from_output(node)] + shape[axis:]
vi = self.known_vi_[node.output[0]]
vi.CopyFrom(helper.make_tensor_value_info(node.output[0], self.known_vi_[node.input[2]].type.tensor_type.elem_type, new_shape))
def _infer_Pad(self, node):
vi = self.known_vi_[node.output[0]]
if None in get_shape_from_type_proto(vi.type):
sympy_shape = self._get_sympy_shape(node, 0)
rank = len(sympy_shape)
pads = get_attribute(node, 'pads')
assert len(pads) == 2*rank
new_shape = [d + pad_up + pad_down for d, pad_up, pad_down in zip(sympy_shape, pads[:rank], pads[rank:])]
self._update_computed_dims(new_shape)
vi.CopyFrom(helper.make_tensor_value_info(node.output[0], vi.type.tensor_type.elem_type, get_shape_from_sympy_shape(new_shape)))
def _infer_Pool(self, node):
sympy_shape = self._compute_conv_pool_shape(node)
self._update_computed_dims(sympy_shape)
for o in node.output:
if not o:
continue
vi = self.known_vi_[o]
vi.CopyFrom(helper.make_tensor_value_info(o, vi.type.tensor_type.elem_type, get_shape_from_sympy_shape(sympy_shape)))
def _infer_Range(self, node):
vi = self.known_vi_[node.output[0]]
input_data = self._get_int_values(node)
if all([i is not None for i in input_data]):
start = as_scalar(input_data[0])
limit = as_scalar(input_data[1])
delta = as_scalar(input_data[2])
new_shape = [sympy.Max(sympy.ceiling((limit - start)/delta), 0)]
else:
new_dim = self._new_symbolic_dim_from_output(node)
new_shape = [self.symbolic_dims_[new_dim]]
vi.CopyFrom(helper.make_tensor_value_info(node.output[0], self.known_vi_[node.input[0]].type.tensor_type.elem_type, get_shape_from_sympy_shape(new_shape)))
def _infer_ReduceProd(self, node):
axes = get_attribute(node, 'axes')
keep_dims = get_attribute(node, 'keepdims')
if keep_dims == 0 and axes == [0]:
data = self._get_int_values(node)[0]
if data is not None:
self.sympy_data_[node.output[0]] = sympy_reduce_product(data)
def _infer_Reshape(self, node):
shape_value = self._get_value(node, 1)
input_shape = self._get_shape(node, 0)
input_sympy_shape = self._get_sympy_shape(node, 0)
total = int(1)
for d in input_sympy_shape:
total = total * d
new_sympy_shape = []
deferred_dim_idx = -1
non_deferred_size = int(1)
for i, d in enumerate(shape_value):
if type(d) == sympy.Symbol:
new_sympy_shape.append(d)
elif d == 0:
new_sympy_shape.append(input_sympy_shape[i])
non_deferred_size = non_deferred_size * input_sympy_shape[i]
else:
new_sympy_shape.append(d)
if d == -1:
deferred_dim_idx = i
elif d != 0:
non_deferred_size = non_deferred_size * d
assert new_sympy_shape.count(-1) < 2
if -1 in new_sympy_shape:
new_dim = total // non_deferred_size
new_sympy_shape[deferred_dim_idx] = new_dim
self._update_computed_dims(new_sympy_shape)
vi = self.known_vi_[node.output[0]]
vi.CopyFrom(helper.make_tensor_value_info(node.output[0],
vi.type.tensor_type.elem_type,
get_shape_from_sympy_shape(new_sympy_shape)))
self._pass_on_sympy_data(node)
def _infer_Resize(self, node):
assert get_opset(self.out_mp_) <= 10 # only support opset 10 Resize for now
scales = self._try_get_value(node, 1)
if scales is not None:
input_sympy_shape = self._get_sympy_shape(node, 0)
new_sympy_shape = [sympy.simplify(sympy.floor(d*s)) for d,s in zip(input_sympy_shape, scales)]
self._update_computed_dims(new_sympy_shape)
vi = self.known_vi_[node.output[0]]
vi.CopyFrom(helper.make_tensor_value_info(node.output[0], self.known_vi_[node.input[0]].type.tensor_type.elem_type, get_shape_from_sympy_shape(new_sympy_shape)))
def _infer_Scan(self, node):
subgraph = get_attribute(node, 'body')
num_scan_inputs = get_attribute(node, 'num_scan_inputs')
scan_input_axes = get_attribute(node, 'scan_input_axes', [0]*num_scan_inputs)
num_scan_states = len(node.input) - num_scan_inputs
scan_input_axes = [handle_negative_axis(ax, self._get_shape_rank(node, i + num_scan_states)) for i, ax in enumerate(scan_input_axes)]
for i, si in enumerate(subgraph.input):
subgraph_name = si.name
si.CopyFrom(self.known_vi_[node.input[i]])
if i >= num_scan_states:
scan_input_dim = si.type.tensor_type.shape.dim
scan_input_dim.remove(scan_input_dim[scan_input_axes[i - num_scan_states]])
si.name = subgraph_name
self._onnx_infer_subgraph(node, subgraph)
num_scan_outputs = len(node.output) - num_scan_states
scan_output_axes = get_attribute(node, 'scan_output_axes', [0]*num_scan_outputs)
scan_input_dim = get_shape_from_type_proto(self.known_vi_[node.input[-1]].type)[scan_input_axes[-1]]
for i, o in enumerate(node.output):
vi = self.known_vi_[o]
if i >= num_scan_states:
shape = get_shape_from_type_proto(subgraph.output[i].type)
new_dim = handle_negative_axis(scan_output_axes[i - num_scan_states], len(shape) + 1)
shape = shape[:new_dim] + [scan_input_dim] + shape[new_dim:]
vi.CopyFrom(helper.make_tensor_value_info(o, subgraph.output[i].type.tensor_type.elem_type, shape))
else:
vi.CopyFrom(subgraph.output[i])
vi.name = o
def _infer_ScatterElements(self, node):
data_shape = self._get_shape(node, 0)
vi = self.known_vi_[node.output[0]]
vi.CopyFrom(helper.make_tensor_value_info(node.output[0],
self.known_vi_[node.input[0]].type.tensor_type.elem_type,
data_shape))
def _infer_Shape(self, node):
self.sympy_data_[node.output[0]] = self._get_sympy_shape(node, 0)
def _infer_Size(self, node):
sympy_shape = self._get_sympy_shape(node, 0)
self.sympy_data_[node.output[0]] = sympy_reduce_product(sympy_shape)
self.known_vi_[node.output[0]].CopyFrom(helper.make_tensor_value_info(node.output[0], onnx.TensorProto.INT64, []))
def _infer_Slice(self, node):
if get_opset(self.out_mp_) <= 9:
axes = get_attribute(node, 'axes')
starts = get_attribute(node, 'starts')
ends = get_attribute(node, 'ends')
steps = [1]*len(axes)
else:
starts = self._try_get_value(node, 1)
ends = self._try_get_value(node, 2)
axes = self._try_get_value(node, 3)
steps = self._try_get_value(node, 4)
if axes is None and not (starts is None and ends is None):
axes = list(range(0, len(starts if starts is not None else ends)))
if steps is None and not (starts is None and ends is None):
steps = [1]*len(starts if starts is not None else ends)
new_shape = self._get_sympy_shape(node, 0)
if starts is None or ends is None:
if axes is None:
for i in range(len(new_shape)):
new_shape[i] = self._new_symbolic_dim_from_output(node,0,i)
else:
new_shape = get_shape_from_sympy_shape(new_shape)
for i in axes:
new_shape[i] = self._new_symbolic_dim_from_output(node,0,i)
else:
for i,s,e,t in zip(axes, starts, ends, steps):
idx = handle_negative_axis(i, len(new_shape))
if is_literal(e):
if e >= int(2 ** 31 - 1): # max value of int32
e = new_shape[i]
elif e <= -int(2 ** 31): # min value of int32
e = 0
elif is_literal(new_shape[i]):
e = min(e, new_shape[i])
else:
if e > 0:
e = sympy.Min(e, new_shape[i])
else:
e = new_shape[i] + e
else:
if is_literal(new_shape[i]):
e = sympy.Min(e, new_shape[i])
else:
try:
if e >= new_shape[i]:
e = new_shape[i]
except Exception:
print('Unable to determine if {} <= {}, treat as equal'.format(e, new_shape[i]))
e = new_shape[i]
if is_literal(s) and int(s) < 0:
s = new_shape[i] + s
new_shape[idx] = (e - s + (-1 if t > 0 else 1)) // t + 1
self._update_computed_dims(new_shape)
new_shape = get_shape_from_sympy_shape(new_shape)
vi = self.known_vi_[node.output[0]]
vi.CopyFrom(helper.make_tensor_value_info(node.output[0],
vi.type.tensor_type.elem_type,
new_shape))
if node.input[0] in self.sympy_data_:
assert [0] == axes
assert len(starts) == 1
assert len(ends) == 1
self.sympy_data_[node.output[0]] = self.sympy_data_[node.input[0]][starts[0]:ends[0]]
def _infer_Split(self, node):
shape = self._get_shape(node, 0)
axis = handle_negative_axis(get_attribute(node, 'axis', 0), len(shape))
split = get_attribute(node, 'split')
if not split:
num_outputs = len(node.output)
split = [int(shape[axis]/num_outputs)]*num_outputs
for i_o in range(len(split)):
vi = self.known_vi_[node.output[i_o]]
vi.CopyFrom(helper.make_tensor_value_info(node.output[i_o],
self.known_vi_[node.input[0]].type.tensor_type.elem_type,
shape[:axis] + [split[i_o]] + shape[axis+1:]))
self.known_vi_[vi.name] = vi
def _infer_Squeeze(self, node):
self._pass_on_sympy_data(node)
def _infer_Tile(self, node):
repeats_value = self._get_value(node, 1)
input_sympy_shape = self._get_sympy_shape(node, 0)
new_shape = []
for i,d in enumerate(input_sympy_shape):
new_dim = d * repeats_value[i]
new_shape.append(new_dim)
self._update_computed_dims(new_shape)
vi = self.known_vi_[node.output[0]]
vi.CopyFrom(helper.make_tensor_value_info(node.output[0],
vi.type.tensor_type.elem_type,
get_shape_from_sympy_shape(new_shape)))
def _infer_TopK(self, node):
rank = self._get_shape_rank(node, 0)
axis = handle_negative_axis(get_attribute(node, 'axis', -1), rank)
new_shape = self._get_shape(node, 0)
if get_opset(self.out_mp_) <= 9:
k = get_attribute(node, 'k')
else:
k = self._get_int_values(node)[1]
if k == None:
k = self._new_symbolic_dim_from_output(node)
else:
k = as_scalar(k)
if type(k) in [int, str]:
new_shape[axis] = k
else:
new_sympy_shape = self._get_sympy_shape(node, 0)
new_sympy_shape[axis] = k
self._update_computed_dims(new_sympy_shape) # note that TopK dim could be computed in sympy_data, so need to update computed_dims when it enters shape
new_shape = get_shape_from_sympy_shape(new_sympy_shape)
for i_o in range(len(node.output)):
vi = self.known_vi_[node.output[i_o]]
vi.CopyFrom(helper.make_tensor_value_info(node.output[i_o], vi.type.tensor_type.elem_type, new_shape))
def _infer_Unsqueeze(self, node):
self._pass_on_sympy_data(node)
def _infer_impl(self, in_mp):
self.sympy_data_ = {}
self.out_mp_.graph.ClearField('value_info')
self._apply_suggested_merge_to_graph_input()
input_symbols = set()
for i in self.out_mp_.graph.input:
input_symbols.update([d for d in get_shape_from_type_proto(i.type) if type(d) == str])
for s in input_symbols:
if s in self.suggested_merge_:
s_merge = self.suggested_merge_[s]
assert s_merge in self.symbolic_dims_
self.symbolic_dims_[s] = self.symbolic_dims_[s_merge]
else:
self.symbolic_dims_[s] = sympy.Symbol(s, integer=True)
# create a temporary ModelProto for single node inference
# note that we remove initializer to have faster inference
# for tensor ops like Reshape/Tile/Expand that read initializer, we need to do sympy computation based inference anyways
self.tmp_mp_ = onnx.ModelProto()
self.tmp_mp_.CopyFrom(self.out_mp_)
self.tmp_mp_.graph.ClearField('initializer')
for node in self.out_mp_.graph.node:
assert all([i in self.known_vi_ for i in node.input if i])
self._onnx_infer_single_node(node)
if node.op_type in self.dispatcher_:
self.dispatcher_[node.op_type](node)
if self.verbose_ > 2:
print(node.op_type + ': ' + node.name)
for i_o in range(len(node.output)):
out_type = self.known_vi_[node.output[i_o]].type
out_shape = get_shape_from_type_proto(self.known_vi_[node.output[i_o]].type)
out_type_undefined = out_type.tensor_type.elem_type == onnx.TensorProto.UNDEFINED
if self.verbose_ > 2:
print(' {}: {} {}'.format(node.output[i_o], str(out_shape), self.known_vi_[node.output[i_o]].type.tensor_type.elem_type))
if node.output[i_o] in self.sympy_data_:
print(' Sympy Data: ' + str(self.sympy_data_[node.output[i_o]]))
if None in out_shape or out_type_undefined:
if self.auto_merge_:
if node.op_type in ['Add', 'Sub', 'Mul', 'Div', 'MatMul', 'Concat', 'Where']:
shapes = [self._get_shape(node, i) for i in range(len(node.input))]
if node.op_type == 'MatMul':
# only support auto merge for MatMul for dim < rank-2 when rank > 2
assert len(shapes[0]) > 2 and dim_idx[0] < len(shapes[0]) - 2
assert len(shapes[1]) > 2 and dim_idx[1] < len(shapes[1]) - 2
elif node.op_type == 'Expand':
# auto merge for cases like Expand([min(batch, 1), min(seq, 512)], [batch, seq])
shapes = [self._get_shape(node, 0), self._get_value(node, 1)]
else:
shapes = []
if shapes:
for idx in range(len(out_shape)):
if out_shape[idx] is not None:
continue
dim_idx = [len(s) - len(out_shape) + idx for s in shapes]
assert all([d >= 0 for d in dim_idx])
self._add_suggested_merge([str(s[i]) for s, i in zip(shapes, dim_idx)])
self.run_ = True
else:
self.run_ = False
else:
self.run_ = False
if self.verbose_ > 0 or not self.auto_merge_ or out_type_undefined:
print('Stopping at incomplete shape inference at ' + node.op_type + ': ' + node.name)
print(node)
print('node inputs:')
for i in node.input:
print(self.known_vi_[i])
print('node outputs:')
for o in node.output:
print(self.known_vi_[o])
if self.auto_merge_ and not out_type_undefined:
print('Merging: ' + str(self.suggested_merge_))
return False
self.run_ = False
return True
def _update_output_from_vi(self):
for output in self.out_mp_.graph.output:
if output.name in self.known_vi_:
output.CopyFrom(self.known_vi_[output.name])
@staticmethod
def infer_shapes(input_model, output_model, auto_merge=False, verbose=0):
in_mp = onnx.load(input_model)
symbolic_shape_inference = SymbolicShapeInference(auto_merge, verbose)
all_shapes_inferred = False
symbolic_shape_inference._preprocess(in_mp)
while symbolic_shape_inference.run_:
all_shapes_inferred = symbolic_shape_inference._infer_impl(in_mp)
symbolic_shape_inference._update_output_from_vi()
onnx.save(symbolic_shape_inference.out_mp_, output_model)
if not all_shapes_inferred:
sys.exit(1)
def parse_arguments():
parser = argparse.ArgumentParser()
parser.add_argument('--input', required=True, help='The input model file')
parser.add_argument('--output', required=True, help='The input model file')
parser.add_argument('--auto_merge', help='Automatically merge symbolic dims when confliction happens', action='store_true', default=False)
parser.add_argument('--verbose', help='Prints detailed logs of inference, 0: turn off, 1: warnings, 3: detailed', type=int, default=0)
return parser.parse_args()
if __name__ == '__main__':
args = parse_arguments()
print('input model: ' + args.input)
print('output model ' + args.output)
print('Doing symbolic shape inference...')
out_mp = SymbolicShapeInference.infer_shapes(args.input, args.output, args.auto_merge, args.verbose)
print('Done!')