Open Problems in Single-Cell Analysis

Formalizing and benchmarking open problems in single-cell genomics.

Visit the Open Problems Website.

For contributing guidelines, see CONTRIBUTING.md.

The team

Core:

Scott Gigante (@scottgigante)
Daniel Burkhardt (@dburkhardt)
Malte Luecken (@LuckyMD)
Angela Pisco (@aopisco)
Olga Botvinnik (@olgabot)

Task authors (alphabetically):

Mohammad Lotfallahi (@M0hammadL) - Label projection task
Qian Qin (@qinqian) - Predicting gene expression from chromatin accessibility
Michael Vinyard (@mvinyard) - Stress preservation in Dimensionality Reduction
Florian Wagner (@flo-compbio) - Data denoising

Supervision (alphabetically):

Smita Krishnaswamy, Yale
Fabian Theis, Helmholtz Munich

Chan Zuckerberg Initiative Support (alphabetically):

Jonah Cool
Fiona Griffin