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ENH: generic/arbitrary input format for VBM #21

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raamana opened this issue Jul 12, 2019 · 0 comments
Open

ENH: generic/arbitrary input format for VBM #21

raamana opened this issue Jul 12, 2019 · 0 comments

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@raamana
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raamana commented Jul 12, 2019

It would be useful for users to offer a toolbox-independent format specify volumetric voxelwise probabilistic images. Two possible options are

  1. folder of folders with a fixed file name (prob.nii?) for image such as
    --input_dir /project/vbm --id_list idlist.txt where /project/vbm would contain a bunch of folders each referring to one of the subject IDs in the id_list which must contain prob.nii
  2. a single CSV file with two columns, the first being the subject ID and the second being full path to the corresponding image (no relation between ID and path enforced):
id1,/project/vbm/id1/somename.nii
random2,/project/vbm/notnecessarily_random2/someothername.nii
arbitrary3,/project/vbm/whateveruserchooses/filename.nii

Choose one and implement it.

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