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advance-option-browse-all-data.php
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advance-option-browse-all-data.php
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<?php
error_reporting(0);
require 'dbcon.php';
$sort = $_POST['sort'] ?? '';
$ad = $_POST['ad'] ?? '';
$activity = $_POST['activity'] ?? '';
$target = $_POST['target'] ?? '';
$organism = $_POST['organism'] ?? '';
$exist = $_POST['exist'] ?? '';
$length = $_POST['length'] ?? '';
$dataset = explode("[", strtolower($_POST['ds']))[0] ?? '';
$tarorg = $_POST['tarorg'] ?? '';
$antim = $_POST['antim'] ?? '';
$q1 = $_POST['q1'] ?? '';
$q3 = $_POST['q3'] ?? '';
$q2 = $_POST['q2'] ?? '';
$o9 = $_POST['o9'] ?? '';
$selDs = '';
if ($dataset != 'master') {
$mdataset = ucfirst(str_replace("`", "", str_replace(" dataset.tsv", "", $dataset)));
if ($mdataset == "Hemolytic" or $mdataset == "Metalloprotease" or $mdataset == "Protease" or $mdataset == "Ribosomal" or $mdataset == "Serine protease" or $mdataset == "Thiol protease" or $mdataset == "Toxin") {
$selDs = "AND `activity` LIKE '%" . strrev($mdataset) . "%'";
} else {
$selDs = "AND `activity` LIKE '%" . str_replace("`", "", str_replace(" dataset.tsv", "", $dataset)) . "%'";
}
}
$tarorgSearch = '';
if (strlen($tarorg) > 0) {
foreach (explode(",", $tarorg) as $aa) {
$tarorgSearch .= "`target organism` LIKE '%$aa%' AND ";
}
}
$tarorgSearch = substr($tarorgSearch, 0, -5);
$antimSearch = '';
if (strlen($antim) > 0) {
foreach (explode(",", $antim) as $aa) {
if ($aa == "Hemolytic" or $aa == "Metalloprotease" or $aa == "Protease" or $aa == "Ribosomal" or $aa == "Serine protease" or $aa == "Thiol protease" or $aa == "Toxin") {
$antimSearch .= "`activity` LIKE '%" . strrev($aa) . "%' AND ";
} else {
$antimSearch .= "`activity` LIKE '%$aa%' AND ";
}
}
}
$antimSearch = substr($antimSearch, 0, -5);
$advanceQuery = str_replace("( )", "(AMPDB_No_ LIKE '%A%')", str_replace("( )", "(AMPDB_No_ LIKE '%A%')", str_replace("( )", "(AMPDB_No_ LIKE '%A%')", str_replace("( )", "(AMPDB_No_ LIKE '%A%')", "(" . str_replace("LIKE '%%' ", "", str_replace("undefined ", "", "$q1 $q3 " . str_replace("TO", "AND", $q2) . " $tarorgSearch $o9 $antimSearch")) . ")"))));
$finalQuery = array();
$sortFilter = '';
if (strlen($sort) != 0) {
$sortFilter .= ' ORDER BY `' . $sort . '` ' . $ad;
}
$preQuery = '';
$arr = explode(",", $activity);
if (strlen($arr[0]) > 0) {
$preSQLarr = array();
foreach ($arr as $ele) {
array_push($preSQLarr, "`activity` LIKE '%$ele%'");
}
$preQuery .= implode(" AND ", $preSQLarr);
array_push($finalQuery, $preQuery);
}
$preQuery = '';
$arr = explode(",", $target);
if (strlen($arr[0]) > 0) {
$preSQLarr = array();
foreach ($arr as $ele) {
array_push($preSQLarr, "`target organism` LIKE '%$ele%'");
}
$preQuery .= implode(" AND ", $preSQLarr);
array_push($finalQuery, $preQuery);
}
$preQuery = '';
$arr = explode(",", $organism);
if (strlen($arr[0]) > 0) {
$preSQLarr = array();
foreach ($arr as $ele) {
array_push($preSQLarr, "`Organism` LIKE '%$ele%'");
}
$preQuery .= implode(" AND ", $preSQLarr);
array_push($finalQuery, $preQuery);
}
$preQuery = '';
$arr = explode(",", $exist);
if (strlen($arr[0]) > 0) {
$preSQLarr = array();
foreach ($arr as $ele) {
array_push($preSQLarr, "`Protein existence` LIKE '%$ele%'");
}
$preQuery .= implode(" AND ", $preSQLarr);
array_push($finalQuery, $preQuery);
}
$preQuery = '';
$arr = explode(",", $length);
if (strlen($arr[0]) > 0) {
$preQuery .= implode(" AND ", $arr);
array_push($finalQuery, $preQuery);
}
$filterQuery = implode(" AND ", $finalQuery);
if (strlen($filterQuery) > 0) {
$filterQuery = " AND " . $filterQuery;
}
$mysort = array("ASC" => "Ascending", "DESC" => "Descending");
$sortArr = array();
foreach ($mysort as $key => $val) {
$match = preg_match_all("/" . str_replace("(", "", str_replace(")", "", str_replace("/", "", $key))) . "/", str_replace("(", "", str_replace(")", "", str_replace("/", "", $ad))));
if ($match != 0) {
$m = '<div class="form-check">
<input type="radio" class="form-check-input" id="' . $key . '" name="ad" value="' . $key . '" checked>
<label style="font-size: smaller;" class="form-check-label" for="' . $key . '">' . $val . '</label>
</div>';
array_push($sortArr, $m);
} else {
$m = '<div class="form-check">
<input type="radio" class="form-check-input" id="' . $key . '" name="ad" value="' . $key . '">
<label style="font-size: smaller;" class="form-check-label" for="' . $key . '">' . $val . '</label>
</div>';
array_push($sortArr, $m);
}
}
?>
<div class="container" style="padding-left:3%;">
<div class="row">
<div class="col-sm" style="padding-left:0px;">
<div class="mb-2" style="font-weight: 500;">Sort Type </div>
<div style="padding-left: 1.7%;">
<?php echo implode("", $sortArr) ?>
</div>
</div>
</div>
</div>
<hr style="height: 3px;">
<?php
$mysort = array("Protein names", "Length", "Gene Names", "Organism", "peptide activity", "target organism");
$sortArr = array();
foreach ($mysort as $thisSort) {
$match = preg_match_all("/" . str_replace("(", "", str_replace(")", "", str_replace("/", "", $thisSort))) . "/", str_replace("(", "", str_replace(")", "", str_replace("/", "", $sort))));
if ($match != 0) {
$m = '<div class="form-check">
<input type="radio" class="form-check-input" id="' . $thisSort . '" name="sort" value="' . $thisSort . '" checked>
<label style="font-size: smaller;" class="form-check-label" for="' . $thisSort . '">' . $thisSort . '</label>
</div>';
array_push($sortArr, $m);
} else {
$m = '<div class="form-check">
<input type="radio" class="form-check-input" id="' . $thisSort . '" name="sort" value="' . $thisSort . '">
<label style="font-size: smaller;" class="form-check-label" for="' . $thisSort . '">' . $thisSort . '</label>
</div>';
array_push($sortArr, $m);
}
}
?>
<div class="container" style="padding-left: 3%;">
<div class="row">
<div class="col-sm" style="padding-left:0px;">
<div class="mb-2" style="font-weight: 500;">Sort By</div>
<div style="padding-left: 1.7%;">
<?php echo implode("", $sortArr) ?>
</div>
</div>
</div>
</div>
<hr style="height: 3px;">
<?php
$sql = str_replace(" LIKE '%undefined%'", "", str_replace(" undefined", "", "SELECT `peptide activity` FROM `master2` WHERE $advanceQuery $selDs $filterQuery $sortFilter"));
$result = $con->query($sql);
$targetArr = array();
while ($row = $result->fetch_assoc()) {
$myTarget = $row['peptide activity'];
array_push($targetArr, $myTarget);
}
$targetArrString = implode(";", $targetArr);
$assocTarget = array();
$targetList = array('Amphibian defense peptide', 'Anti-HSV', 'Anti-MRSA', 'Anti-biofilm', 'Anti-candida', 'Anti-gram-Positive', 'Anti-gram-negative', 'Anti-hepatities', 'Anti-listeria', 'Anti-malarial', 'Anti-mollicute', 'Anti-parasitic', 'Anti-plasmodium', 'Anti-protozoal', 'Anti-tuberculosis', 'Anti-yeast', 'Antibiotic', 'Antimicrobial', 'Antioxidant', 'Antiviral protein', 'Bacteriocin', 'Bacteriolytic enzyme', 'Defensin', 'Fungicide', 'Lantibiotic', 'Plant defense');
foreach ($targetList as $trget) {
$match = preg_match_all("/" . str_replace("(", "", str_replace(")", "", str_replace("/", "", $trget))) . "/", str_replace("(", "", str_replace(")", "", str_replace("/", "", $targetArrString))));
if ($match != 0) {
$assocTarget[$trget] = $match;
}
}
arsort($assocTarget);
$mySelectedAct = array();
foreach ($assocTarget as $key => $val) {
$match = preg_match_all("/" . str_replace("(", "", str_replace(")", "", str_replace("/", "", $key))) . "/", str_replace("(", "", str_replace(")", "", str_replace("/", "", $activity))));
if ($match != 0) {
$m = '<div class="form-check" style="font-size: smaller"><input type="checkbox" class="form-check-input"
id="' . $key . '" name="activity" value="' . $key . '" checked><label class="form-check-label"
for="' . $key . '" >' . $key . ' (' . $val . ')' . '</label></div>';
array_push($mySelectedAct, $m);
} else {
$m = '<div class="form-check" style="font-size: smaller"><input type="checkbox" class="form-check-input"
id="' . $key . '" name="activity" value="' . $key . '"><label class="form-check-label"
for="' . $key . '" >' . $key . ' (' . $val . ')' . '</label></div>';
array_push($mySelectedAct, $m);
}
}
?>
<div class="continer ">
<div class="row">
<div class="col-sm">
<div class="mb-2" style="font-weight: 500;">Antimicrobial Activity</div>
<?php if (count($mySelectedAct) > 10) { ?>
<div class="scr" style="padding-left: 1.7%; padding-top:0.5%; padding-bottom: 0.5%;">
<?php echo (implode("", $mySelectedAct)); ?>
</div>
<?php } else { ?>
<div style="padding-left: 1.7%; padding-top:0.5%; padding-bottom: 0.5%;">
<?php echo (implode("", $mySelectedAct)); ?>
</div>
<?php } ?>
</div>
</div>
</div>
<hr style="height: 3px;">
<?php
$sql = str_replace(" LIKE '%undefined%'", "", str_replace(" undefined", "", "SELECT `target organism` FROM `master2` WHERE $advanceQuery $selDs $filterQuery $sortFilter"));
$result = $con->query($sql);
$targetArr = array();
while ($row = $result->fetch_assoc()) {
$myTarget = $row['target organism'];
if ($myTarget != 'No Target Organism Found') {
array_push($targetArr, $myTarget);
}
}
$AlltargetList = array();
foreach ($targetArr as $entArr) {
$explodeTarget = explode(";", $entArr);
foreach ($explodeTarget as $indTarget) {
array_push($AlltargetList, $indTarget);
}
}
$targetList = array_unique($AlltargetList);
$targetArrString = implode(";", $targetArr);
$assocTarget = array();
foreach ($targetList as $trget) {
$match = preg_match_all("/" . str_replace(")", "", str_replace("(", "", str_replace("/", "", $trget))) . "/", str_replace("/", "", str_replace(")", "", str_replace("(", "", $targetArrString))));
if ($match != 0) {
$assocTarget[$trget] = $match;
}
}
arsort($assocTarget);
$mySelectedAct = array();
foreach ($assocTarget as $key => $val) {
$match = preg_match_all("/" . str_replace("(", "", str_replace(")", "", str_replace("/", "", $key))) . "/", str_replace("(", "", str_replace(")", "", str_replace("/", "", $target))));
if ($match != 0) {
$m = '<div class="form-check" style="font-size: smaller"><input type="checkbox" class="form-check-input"
id="' . $key . '" name="target" value="' . $key . '" checked><label class="form-check-label"
for="' . $key . '" >' . $key . ' (' . $val . ')' . '</label></div>';
array_push($mySelectedAct, $m);
} else {
$m = '<div class="form-check" style="font-size: smaller"><input type="checkbox" class="form-check-input"
id="' . $key . '" name="target" value="' . $key . '"><label class="form-check-label"
for="' . $key . '" >' . $key . ' (' . $val . ')' . '</label></div>';
array_push($mySelectedAct, $m);
}
}
?>
<div class="continer ">
<div class="row">
<div class="col-sm">
<div class="mb-2" style="font-weight: 500;">Target Organism</div>
<?php if (count($mySelectedAct) > 10) { ?>
<div class="scr" style="padding-left: 1.7%; padding-top:0.5%; padding-bottom: 0.5%;">
<?php echo (implode("", $mySelectedAct)); ?>
</div>
<?php } else { ?>
<div style="padding-left: 1.7%; padding-top:0.5%; padding-bottom: 0.5%;">
<?php echo (implode("", $mySelectedAct)); ?>
</div>
<?php } ?>
</div>
</div>
</div>
<hr style="height: 3px;">
<?php
$sql = str_replace(" LIKE '%undefined%'", "", str_replace(" undefined", "", "SELECT `Organism` FROM `master2` WHERE $advanceQuery $selDs $filterQuery $sortFilter"));
$result = $con->query($sql);
$targetArr = array();
while ($row = $result->fetch_assoc()) {
$myTarget = $row['Organism'];
array_push($targetArr, explode("(", $myTarget)[0]);
}
$targetArrString = implode(" ", $targetArr);
$mysql = str_replace(" LIKE '%undefined%'", "", str_replace(" undefined", "", "SELECT DISTINCT(`Organism`) FROM `master2` WHERE $advanceQuery $selDs $filterQuery $sortFilter"));
$targetList = array();
$myResult = $con->query($mysql);
while ($row = $myResult->fetch_assoc()) {
array_push($targetList, explode("(", $row['Organism'])[0]);
}
$assocTarget = array();
$c = 1;
foreach ($targetList as $trget) {
$match = preg_match_all("/" . str_replace("(", "", str_replace(")", "", str_replace("/", "", $trget))) . "/", str_replace("(", "", str_replace(")", "", str_replace("/", "", $targetArrString))));
if ($match > 1) {
$assocTarget[$trget] = $match;
}
if ($c == 50) {
break;
}
$c += 1;
$targetArrString = str_replace("$trget", "", $targetArrString);
}
arsort($assocTarget);
$mySelectedAct = array();
foreach ($assocTarget as $key => $val) {
$match = preg_match_all("/" . str_replace("(", "", str_replace(")", "", str_replace("/", "", $key))) . "/", str_replace("(", "", str_replace(")", "", str_replace("/", "", $organism))));
if ($match != 0) {
$m = '<div class="form-check" style="font-size: smaller"><input type="checkbox" class="form-check-input"
id="' . $key . '" name="organism" value="' . $key . '" checked><label class="form-check-label"
for="' . $key . '" >' . $key . ' (' . $val . ')' . '</label></div>';
array_push($mySelectedAct, $m);
} else {
$m = '<div class="form-check" style="font-size: smaller"><input type="checkbox" class="form-check-input"
id="' . $key . '" name="organism" value="' . $key . '"><label class="form-check-label"
for="' . $key . '" >' . $key . ' (' . $val . ')' . '</label></div>';
array_push($mySelectedAct, $m);
}
}
?>
<div class="continer ">
<div class="row">
<div class="col-sm">
<div class="mb-2" style="font-weight: 500;">Common Source Organism</div>
<?php if (count($mySelectedAct) > 10) { ?>
<div class="scr" style="padding-left: 1.7%; padding-top:0.5%; padding-bottom: 0.5%;">
<?php echo (implode("", $mySelectedAct)); ?>
</div>
<?php } else { ?>
<div style="padding-left: 1.7%; padding-top:0.5%; padding-bottom: 0.5%;">
<?php echo (implode("", $mySelectedAct)); ?>
</div>
<?php } ?>
</div>
</div>
</div>
<hr style="height: 3px;">
<?php
$sql = str_replace(" LIKE '%undefined%'", "", str_replace(" undefined", "", "SELECT `Protein existence` FROM `master2` WHERE $advanceQuery $selDs $filterQuery $sortFilter"));
$result = $con->query($sql);
$targetArr = array();
while ($row = $result->fetch_assoc()) {
$myTarget = $row['Protein existence'];
array_push($targetArr, $myTarget);
}
$targetArrString = implode(" ", $targetArr);
$assocTarget = array();
$targetList = array('Predicted', 'Homology', 'Transcript level', 'Protein level', 'Uncertain');
foreach ($targetList as $trget) {
$match = preg_match_all("/" . str_replace("(", "", str_replace(")", "", str_replace("/", "", $trget))) . "/i", str_replace("(", "", str_replace(")", "", str_replace("/", "", $targetArrString))));
if ($match != 0) {
$assocTarget[$trget] = $match;
}
}
arsort($assocTarget);
$mySelectedAct = array();
foreach ($assocTarget as $key => $val) {
$match = preg_match_all("/" . str_replace("(", "", str_replace(")", "", str_replace("/", "", $key))) . "/", str_replace("(", "", str_replace(")", "", str_replace("/", "", $exist))));
if ($match != 0) {
$m = '<div class="form-check" style="font-size: smaller"><input type="checkbox" class="form-check-input"
id="' . $key . '" name="exist" value="' . $key . '" checked><label class="form-check-label"
for="' . $key . '" >' . $key . ' (' . $val . ')' . '</label></div>';
array_push($mySelectedAct, $m);
} else {
$m = '<div class="form-check" style="font-size: smaller"><input type="checkbox" class="form-check-input"
id="' . $key . '" name="exist" value="' . $key . '"><label class="form-check-label"
for="' . $key . '" >' . $key . ' (' . $val . ')' . '</label></div>';
array_push($mySelectedAct, $m);
}
}
?>
<div class="continer ">
<div class="row">
<div class="col-sm">
<div class="mb-2" style="font-weight: 500;">Protein Existence Level</div>
<div style="padding-left: 1.7%; padding-top:0.5%; padding-bottom: 0.5%;">
<?php echo (implode("", $mySelectedAct)); ?>
</div>
</div>
</div>
</div>
<hr style="height: 3px;">
<?php
$mySelectedAct = array();
$start = 1;
$end = 100;
$assArr = array();
for ($i = 0; $i < 6; $i += 1) {
$myval = '';
if ($start > 500) {
$myval = " Length > 500 ";
} else {
$myval = " Length BETWEEN " . ($start) . " AND $end ";
}
$mysql5 = str_replace(" LIKE '%undefined%'", "", str_replace(" undefined", "", "SELECT COUNT(Serial_No) FROM `master2` WHERE $advanceQuery $selDs $filterQuery AND $myval $sortFilter"));
$assOxx = $con->query($mysql5);
$mydata = $assOxx->fetch_all()[0][0];
if ($mydata > 0) {
$assArr[$myval] = $mydata;
}
$start += 100;
$end += 100;
}
foreach ($assArr as $key => $val) {
$match = preg_match_all("/" . str_replace("(", "", str_replace(")", "", str_replace("/", "", $key))) . "/", str_replace("(", "", str_replace(")", "", str_replace("/", "", $length))));
if ($match != 0) {
$m = '<div class="form-check">
<input type="radio" class="form-check-input" id="' . $key . '" name="length" value="' . $key . '" checked>
<label style="font-size: smaller;" class="form-check-label" for="' . $key . '">' . str_replace('AND', 'TO', str_replace(' Length ', '', str_replace(' Length BETWEEN ', '', $key))) . ' (' . $val . ')' . '</label>
</div>';
array_push($mySelectedAct, $m);
} else {
$m = '<div class="form-check">
<input type="radio" class="form-check-input" id="' . $key . '" name="length" value="' . $key . '">
<label style="font-size: smaller;" class="form-check-label" for="' . $key . '">' . str_replace('AND', 'TO', str_replace(' Length ', '', str_replace(' Length BETWEEN ', '', $key))) . ' (' . $val . ')' . '</label>
</div>';
array_push($mySelectedAct, $m);
}
}
?>
<div class="continer ">
<div class="row">
<div class="col-sm">
<div class="mb-2" style="font-weight: 500;">Sequence Length</div>
<div style="padding-left: 1.7%; padding-top:0.5%; padding-bottom: 0.5%;">
<?php
echo (implode("", $mySelectedAct));
?>
</div>
</div>
</div>
</div>
<?php
$con->close();
?>