index.rst

PASTE: Probabilistic Alignment of Spatial Transcriptomics Experiments

PASTE is a computational method that leverages both gene expression similarity and spatial distances between spots to align and integrate spatial transcriptomics data. In particular, PASTE provides two main functionalities:

1. Pairwise Alignment: align spots across pairwise slices.
2. Center Alignment: integrate multiple slices into one center slice.

Manuscript

You can view our preprint on bioRxiv.

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   installation
   api
   tutorial