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HI,
I am trying to run phamb in parallel-annotation mode, and when I used split_contigs.py as the code below
python split_contigs.py -c contigs.fna.gz
the results ´assembly´ folder and ´sample_table.txt´ file are empty.
What should I do?
thanks !
The text was updated successfully, but these errors were encountered:
It sounds like your contigs are not named in a way that works with the script.
Contigs named i.e. like this would work with the default split (-s "C") parameter of the script
Sample1Contig1
Sample1Contig2
Show me an example of your contig headers, then it's easier to figure out.
It sounds like your contigs are not named in a way that works with the script. Contigs named i.e. like this would work with the default split (-s "C") parameter of the script
Sample1Contig1
Sample1Contig2
Show me an example of your contig headers, then it's easier to figure out.
HI,
I am trying to run phamb in parallel-annotation mode, and when I used split_contigs.py as the code below
python split_contigs.py -c contigs.fna.gz
the results ´assembly´ folder and ´sample_table.txt´ file are empty.
What should I do?
thanks !
The text was updated successfully, but these errors were encountered: