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I'm getting this error when running the command @sjperkins :
2022-11-02 10:34:29,585 - dask-ms - WARNING - Ignoring 'FLAG_CATEGORY': Unable to infer shape of column 'FLAG_CATEGORY' due to: 'Table DataManager error: Invalid operation: TSM: no array in row 21032324 of column FLAG_CATEGORY in /home/vicente/Documentos/Ayudantia/complete_data/HLTau_B6cont.calavg/table.f18' 2022-11-02 10:34:29,592 - dask-ms - WARNING - Ignoring 'WEIGHT_SPECTRUM': Unable to infer shape of column 'WEIGHT_SPECTRUM' due to: 'Table DataManager error: Invalid operation: TSM: no array in row 21037373 of column WEIGHT_SPECTRUM in /home/vicente/Documentos/Ayudantia/complete_data/HLTau_B6cont.calavg/table.f19' 2022-11-02 10:34:29,597 - dask-ms - WARNING - Ignoring 'FLAG_CATEGORY': Unable to infer shape of column 'FLAG_CATEGORY' due to: 'Table DataManager error: Invalid operation: TSM: no array in row 21037373 of column FLAG_CATEGORY in /home/vicente/Documentos/Ayudantia/complete_data/HLTau_B6cont.calavg/table.f18' 2022-11-02 10:34:29,602 - dask-ms - WARNING - Ignoring 'WEIGHT_SPECTRUM': Unable to infer shape of column 'WEIGHT_SPECTRUM' due to: 'Table DataManager error: Invalid operation: TSM: no array in row 21042422 of column WEIGHT_SPECTRUM in /home/vicente/Documentos/Ayudantia/complete_data/HLTau_B6cont.calavg/table.f19' 2022-11-02 10:34:29,607 - dask-ms - WARNING - Ignoring 'FLAG_CATEGORY': Unable to infer shape of column 'FLAG_CATEGORY' due to: 'Table DataManager error: Invalid operation: TSM: no array in row 21042422 of column FLAG_CATEGORY in /home/vicente/Documentos/Ayudantia/complete_data/HLTau_B6cont.calavg/table.f18' 2022-11-02 10:34:29,613 - dask-ms - WARNING - Ignoring 'WEIGHT_SPECTRUM': Unable to infer shape of column 'WEIGHT_SPECTRUM' due to: 'Table DataManager error: Invalid operation: TSM: no array in row 21047471 of column WEIGHT_SPECTRUM in /home/vicente/Documentos/Ayudantia/complete_data/HLTau_B6cont.calavg/table.f19' 2022-11-02 10:34:29,617 - dask-ms - WARNING - Ignoring 'FLAG_CATEGORY': Unable to infer shape of column 'FLAG_CATEGORY' due to: 'Table DataManager error: Invalid operation: TSM: no array in row 21047471 of column FLAG_CATEGORY in /home/vicente/Documentos/Ayudantia/complete_data/HLTau_B6cont.calavg/table.f18' 2022-11-02 10:34:29,624 - dask-ms - WARNING - Ignoring 'WEIGHT_SPECTRUM': Unable to infer shape of column 'WEIGHT_SPECTRUM' due to: 'Table DataManager error: Invalid operation: TSM: no array in row 21088424 of column WEIGHT_SPECTRUM in /home/vicente/Documentos/Ayudantia/complete_data/HLTau_B6cont.calavg/table.f19' 2022-11-02 10:34:29,629 - dask-ms - WARNING - Ignoring 'FLAG_CATEGORY': Unable to infer shape of column 'FLAG_CATEGORY' due to: 'Table DataManager error: Invalid operation: TSM: no array in row 21088424 of column FLAG_CATEGORY in /home/vicente/Documentos/Ayudantia/complete_data/HLTau_B6cont.calavg/table.f18' 2022-11-02 10:34:29,634 - dask-ms - WARNING - Ignoring 'WEIGHT_SPECTRUM': Unable to infer shape of column 'WEIGHT_SPECTRUM' due to: 'Table DataManager error: Invalid operation: TSM: no array in row 21092912 of column WEIGHT_SPECTRUM in /home/vicente/Documentos/Ayudantia/complete_data/HLTau_B6cont.calavg/table.f19' 2022-11-02 10:34:29,640 - dask-ms - WARNING - Ignoring 'FLAG_CATEGORY': Unable to infer shape of column 'FLAG_CATEGORY' due to: 'Table DataManager error: Invalid operation: TSM: no array in row 21092912 of column FLAG_CATEGORY in /home/vicente/Documentos/Ayudantia/complete_data/HLTau_B6cont.calavg/table.f18' 2022-11-02 10:34:29,646 - dask-ms - WARNING - Ignoring 'WEIGHT_SPECTRUM': Unable to infer shape of column 'WEIGHT_SPECTRUM' due to: 'Table DataManager error: Invalid operation: TSM: no array in row 21097400 of column WEIGHT_SPECTRUM in /home/vicente/Documentos/Ayudantia/complete_data/HLTau_B6cont.calavg/table.f19' 2022-11-02 10:34:29,651 - dask-ms - WARNING - Ignoring 'FLAG_CATEGORY': Unable to infer shape of column 'FLAG_CATEGORY' due to: 'Table DataManager error: Invalid operation: TSM: no array in row 21097400 of column FLAG_CATEGORY in /home/vicente/Documentos/Ayudantia/complete_data/HLTau_B6cont.calavg/table.f18' 2022-11-02 10:34:29,657 - dask-ms - WARNING - Ignoring 'WEIGHT_SPECTRUM': Unable to infer shape of column 'WEIGHT_SPECTRUM' due to: 'Table DataManager error: Invalid operation: TSM: no array in row 21101888 of column WEIGHT_SPECTRUM in /home/vicente/Documentos/Ayudantia/complete_data/HLTau_B6cont.calavg/table.f19' 2022-11-02 10:34:29,661 - dask-ms - WARNING - Ignoring 'FLAG_CATEGORY': Unable to infer shape of column 'FLAG_CATEGORY' due to: 'Table DataManager error: Invalid operation: TSM: no array in row 21101888 of column FLAG_CATEGORY in /home/vicente/Documentos/Ayudantia/complete_data/HLTau_B6cont.calavg/table.f18' 2022-11-02 10:34:29,666 - dask-ms - WARNING - Ignoring 'WEIGHT_SPECTRUM': Unable to infer shape of column 'WEIGHT_SPECTRUM' due to: 'Table DataManager error: Invalid operation: TSM: no array in row 21160232 of column WEIGHT_SPECTRUM in /home/vicente/Documentos/Ayudantia/complete_data/HLTau_B6cont.calavg/table.f19' 2022-11-02 10:34:29,672 - dask-ms - WARNING - Ignoring 'FLAG_CATEGORY': Unable to infer shape of column 'FLAG_CATEGORY' due to: 'Table DataManager error: Invalid operation: TSM: no array in row 21160232 of column FLAG_CATEGORY in /home/vicente/Documentos/Ayudantia/complete_data/HLTau_B6cont.calavg/table.f18' 2022-11-02 10:34:29,678 - dask-ms - WARNING - Ignoring 'WEIGHT_SPECTRUM': Unable to infer shape of column 'WEIGHT_SPECTRUM' due to: 'Table DataManager error: Invalid operation: TSM: no array in row 21164720 of column WEIGHT_SPECTRUM in /home/vicente/Documentos/Ayudantia/complete_data/HLTau_B6cont.calavg/table.f19' 2022-11-02 10:34:29,683 - dask-ms - WARNING - Ignoring 'FLAG_CATEGORY': Unable to infer shape of column 'FLAG_CATEGORY' due to: 'Table DataManager error: Invalid operation: TSM: no array in row 21164720 of column FLAG_CATEGORY in /home/vicente/Documentos/Ayudantia/complete_data/HLTau_B6cont.calavg/table.f18' 2022-11-02 10:34:29,689 - dask-ms - WARNING - Ignoring 'WEIGHT_SPECTRUM': Unable to infer shape of column 'WEIGHT_SPECTRUM' due to: 'Table DataManager error: Invalid operation: TSM: no array in row 21169208 of column WEIGHT_SPECTRUM in /home/vicente/Documentos/Ayudantia/complete_data/HLTau_B6cont.calavg/table.f19' 2022-11-02 10:34:29,694 - dask-ms - WARNING - Ignoring 'FLAG_CATEGORY': Unable to infer shape of column 'FLAG_CATEGORY' due to: 'Table DataManager error: Invalid operation: TSM: no array in row 21169208 of column FLAG_CATEGORY in /home/vicente/Documentos/Ayudantia/complete_data/HLTau_B6cont.calavg/table.f18' 2022-11-02 10:34:29,699 - dask-ms - WARNING - Ignoring 'WEIGHT_SPECTRUM': Unable to infer shape of column 'WEIGHT_SPECTRUM' due to: 'Table DataManager error: Invalid operation: TSM: no array in row 21173696 of column WEIGHT_SPECTRUM in /home/vicente/Documentos/Ayudantia/complete_data/HLTau_B6cont.calavg/table.f19' 2022-11-02 10:34:29,704 - dask-ms - WARNING - Ignoring 'FLAG_CATEGORY': Unable to infer shape of column 'FLAG_CATEGORY' due to: 'Table DataManager error: Invalid operation: TSM: no array in row 21173696 of column FLAG_CATEGORY in /home/vicente/Documentos/Ayudantia/complete_data/HLTau_B6cont.calavg/table.f18' 2022-11-02 10:34:29,711 - dask-ms - WARNING - Ignoring 'WEIGHT_SPECTRUM': Unable to infer shape of column 'WEIGHT_SPECTRUM' due to: 'Table DataManager error: Invalid operation: TSM: no array in row 21232040 of column WEIGHT_SPECTRUM in /home/vicente/Documentos/Ayudantia/complete_data/HLTau_B6cont.calavg/table.f19' 2022-11-02 10:34:29,716 - dask-ms - WARNING - Ignoring 'FLAG_CATEGORY': Unable to infer shape of column 'FLAG_CATEGORY' due to: 'Table DataManager error: Invalid operation: TSM: no array in row 21232040 of column FLAG_CATEGORY in /home/vicente/Documentos/Ayudantia/complete_data/HLTau_B6cont.calavg/table.f18' 2022-11-02 10:34:29,721 - dask-ms - WARNING - Ignoring 'WEIGHT_SPECTRUM': Unable to infer shape of column 'WEIGHT_SPECTRUM' due to: 'Table DataManager error: Invalid operation: TSM: no array in row 21236528 of column WEIGHT_SPECTRUM in /home/vicente/Documentos/Ayudantia/complete_data/HLTau_B6cont.calavg/table.f19' 2022-11-02 10:34:29,726 - dask-ms - WARNING - Ignoring 'FLAG_CATEGORY': Unable to infer shape of column 'FLAG_CATEGORY' due to: 'Table DataManager error: Invalid operation: TSM: no array in row 21236528 of column FLAG_CATEGORY in /home/vicente/Documentos/Ayudantia/complete_data/HLTau_B6cont.calavg/table.f18' 2022-11-02 10:34:29,732 - dask-ms - WARNING - Ignoring 'WEIGHT_SPECTRUM': Unable to infer shape of column 'WEIGHT_SPECTRUM' due to: 'Table DataManager error: Invalid operation: TSM: no array in row 21241016 of column WEIGHT_SPECTRUM in /home/vicente/Documentos/Ayudantia/complete_data/HLTau_B6cont.calavg/table.f19' 2022-11-02 10:34:29,736 - dask-ms - WARNING - Ignoring 'FLAG_CATEGORY': Unable to infer shape of column 'FLAG_CATEGORY' due to: 'Table DataManager error: Invalid operation: TSM: no array in row 21241016 of column FLAG_CATEGORY in /home/vicente/Documentos/Ayudantia/complete_data/HLTau_B6cont.calavg/table.f18' 2022-11-02 10:34:29,743 - dask-ms - WARNING - Ignoring 'WEIGHT_SPECTRUM': Unable to infer shape of column 'WEIGHT_SPECTRUM' due to: 'Table DataManager error: Invalid operation: TSM: no array in row 21245504 of column WEIGHT_SPECTRUM in /home/vicente/Documentos/Ayudantia/complete_data/HLTau_B6cont.calavg/table.f19' 2022-11-02 10:34:29,748 - dask-ms - WARNING - Ignoring 'FLAG_CATEGORY': Unable to infer shape of column 'FLAG_CATEGORY' due to: 'Table DataManager error: Invalid operation: TSM: no array in row 21245504 of column FLAG_CATEGORY in /home/vicente/Documentos/Ayudantia/complete_data/HLTau_B6cont.calavg/table.f18' 2022-11-02 10:34:29,753 - dask-ms - WARNING - Ignoring 'WEIGHT_SPECTRUM': Unable to infer shape of column 'WEIGHT_SPECTRUM' due to: 'Table DataManager error: Invalid operation: TSM: no array in row 21303848 of column WEIGHT_SPECTRUM in /home/vicente/Documentos/Ayudantia/complete_data/HLTau_B6cont.calavg/table.f19' 2022-11-02 10:34:29,758 - dask-ms - WARNING - Ignoring 'FLAG_CATEGORY': Unable to infer shape of column 'FLAG_CATEGORY' due to: 'Table DataManager error: Invalid operation: TSM: no array in row 21303848 of column FLAG_CATEGORY in /home/vicente/Documentos/Ayudantia/complete_data/HLTau_B6cont.calavg/table.f18' 2022-11-02 10:34:29,764 - dask-ms - WARNING - Ignoring 'WEIGHT_SPECTRUM': Unable to infer shape of column 'WEIGHT_SPECTRUM' due to: 'Table DataManager error: Invalid operation: TSM: no array in row 21308336 of column WEIGHT_SPECTRUM in /home/vicente/Documentos/Ayudantia/complete_data/HLTau_B6cont.calavg/table.f19' 2022-11-02 10:34:29,769 - dask-ms - WARNING - Ignoring 'FLAG_CATEGORY': Unable to infer shape of column 'FLAG_CATEGORY' due to: 'Table DataManager error: Invalid operation: TSM: no array in row 21308336 of column FLAG_CATEGORY in /home/vicente/Documentos/Ayudantia/complete_data/HLTau_B6cont.calavg/table.f18' 2022-11-02 10:34:29,775 - dask-ms - WARNING - Ignoring 'WEIGHT_SPECTRUM': Unable to infer shape of column 'WEIGHT_SPECTRUM' due to: 'Table DataManager error: Invalid operation: TSM: no array in row 21312824 of column WEIGHT_SPECTRUM in /home/vicente/Documentos/Ayudantia/complete_data/HLTau_B6cont.calavg/table.f19' 2022-11-02 10:34:29,780 - dask-ms - WARNING - Ignoring 'FLAG_CATEGORY': Unable to infer shape of column 'FLAG_CATEGORY' due to: 'Table DataManager error: Invalid operation: TSM: no array in row 21312824 of column FLAG_CATEGORY in /home/vicente/Documentos/Ayudantia/complete_data/HLTau_B6cont.calavg/table.f18' 2022-11-02 10:34:29,786 - dask-ms - WARNING - Ignoring 'WEIGHT_SPECTRUM': Unable to infer shape of column 'WEIGHT_SPECTRUM' due to: 'Table DataManager error: Invalid operation: TSM: no array in row 21317312 of column WEIGHT_SPECTRUM in /home/vicente/Documentos/Ayudantia/complete_data/HLTau_B6cont.calavg/table.f19' 2022-11-02 10:34:29,792 - dask-ms - WARNING - Ignoring 'FLAG_CATEGORY': Unable to infer shape of column 'FLAG_CATEGORY' due to: 'Table DataManager error: Invalid operation: TSM: no array in row 21317312 of column FLAG_CATEGORY in /home/vicente/Documentos/Ayudantia/complete_data/HLTau_B6cont.calavg/table.f18' 2022-11-02 10:34:31,247 - dask-ms - INFO - Input: 'measurementset' file:///home/vicente/Documentos/Ayudantia/complete_data/HLTau_B6cont.calavg 2022-11-02 10:34:31,247 - dask-ms - INFO - Output: 'measurementset' file:///home/vicente/Documentos/Ayudantia/complete_data/HLTau_B6cont.calavg_time 2022-11-02 10:35:21,005 - dask-ms - WARNING - The shape of column 'ASSOC_SPW_ID' is unconstrained (ndim == -1). Assuming shape is (31,) from exemplar 2022-11-02 10:35:21,011 - dask-ms - WARNING - The shape of column 'ASSOC_NATURE' is unconstrained (ndim == -1). Assuming shape is (31,) from exemplar 2022-11-02 10:35:21,015 - dask-ms - WARNING - The shape of column 'ASSOC_SPW_ID' is unconstrained (ndim == -1). Assuming shape is (31,) from exemplar 2022-11-02 10:35:21,021 - dask-ms - WARNING - The shape of column 'ASSOC_NATURE' is unconstrained (ndim == -1). Assuming shape is (31,) from exemplar 2022-11-02 10:35:21,025 - dask-ms - WARNING - The shape of column 'ASSOC_SPW_ID' is unconstrained (ndim == -1). Assuming shape is (31,) from exemplar 2022-11-02 10:35:21,031 - dask-ms - WARNING - The shape of column 'ASSOC_NATURE' is unconstrained (ndim == -1). Assuming shape is (31,) from exemplar 2022-11-02 10:35:21,036 - dask-ms - WARNING - The shape of column 'ASSOC_SPW_ID' is unconstrained (ndim == -1). Assuming shape is (31,) from exemplar 2022-11-02 10:35:21,042 - dask-ms - WARNING - The shape of column 'ASSOC_NATURE' is unconstrained (ndim == -1). Assuming shape is (31,) from exemplar 2022-11-02 10:35:21,521 - dask-ms - WARNING - Ignoring SOURCE 2022-11-02 10:35:21,525 - dask-ms - WARNING - Ignoring 'TARGET': Unable to infer shape of column 'TARGET' due to: 'TableProxy::getCell: no such row' 2022-11-02 10:35:21,526 - dask-ms - WARNING - Ignoring 'ENCODER': Unable to infer shape of column 'ENCODER' due to: 'TableProxy::getCell: no such row' 2022-11-02 10:35:21,527 - dask-ms - WARNING - Ignoring 'POINTING_OFFSET': Unable to infer shape of column 'POINTING_OFFSET' due to: 'TableProxy::getCell: no such row' 2022-11-02 10:35:21,527 - dask-ms - WARNING - Ignoring 'DIRECTION': Unable to infer shape of column 'DIRECTION' due to: 'TableProxy::getCell: no such row' Traceback (most recent call last): File "/home/vicente/anaconda3/envs/pyralysis2/bin/dask-ms", line 8, in <module> sys.exit(main()) File "/home/vicente/anaconda3/envs/pyralysis2/lib/python3.8/site-packages/daskms/apps/entrypoint.py", line 9, in main return EntryPoint(sys.argv[1:]).execute() File "/home/vicente/anaconda3/envs/pyralysis2/lib/python3.8/site-packages/daskms/apps/entrypoint.py", line 33, in execute cmd.execute() File "/home/vicente/anaconda3/envs/pyralysis2/lib/python3.8/site-packages/daskms/apps/convert.py", line 415, in execute writes = self.convert_table(self.args) File "/home/vicente/anaconda3/envs/pyralysis2/lib/python3.8/site-packages/daskms/apps/convert.py", line 500, in convert_table writes.append(writer(datasets, out_store)) File "/home/vicente/anaconda3/envs/pyralysis2/lib/python3.8/site-packages/daskms/dask_ms.py", line 102, in xds_to_table out_ds = write_datasets( File "/home/vicente/anaconda3/envs/pyralysis2/lib/python3.8/site-packages/daskms/writes.py", line 760, in write_datasets tp = _updated_table(table, datasets, columns, descriptor) File "/home/vicente/anaconda3/envs/pyralysis2/lib/python3.8/site-packages/daskms/writes.py", line 338, in _updated_table table_proxy.addcols(_table_desc, dminfo=_dminfo).result() File "/home/vicente/anaconda3/envs/pyralysis2/lib/python3.8/concurrent/futures/_base.py", line 444, in result return self.__get_result() File "/home/vicente/anaconda3/envs/pyralysis2/lib/python3.8/concurrent/futures/_base.py", line 389, in __get_result raise self._exception File "/home/vicente/anaconda3/envs/pyralysis2/lib/python3.8/concurrent/futures/thread.py", line 57, in run result = self.fn(*self.args, **self.kwargs) File "/home/vicente/anaconda3/envs/pyralysis2/lib/python3.8/site-packages/daskms/table_proxy.py", line 114, in _impl return getattr(table, method)(*args, **kwargs) File "/home/vicente/anaconda3/envs/pyralysis2/lib/python3.8/site-packages/casacore/tables/table.py", line 1226, in addcols self._addcols(tdesc, dminfo, addtoparent) RuntimeError: Invalid Table operation: Data manager name StandardStMan is already used in table /home/vicente/Documentos/Ayudantia/complete_data/HLTau_B6cont.calavg_time/POINTING
Originally posted by @miguelcarcamov in #159 (comment)
The text was updated successfully, but these errors were encountered:
@sjperkins
Maybe if I add the link to the ms here you can traceback the error?
The command line that I'm currently using is:
dask-ms convert HLTau_B6cont.calavg.tav300s -g "FIELD_ID,DATA_DESC_ID,SCAN_NUMBER" -i "ANTENNA1,ANTENNA2,TIME,FEED1,FEED2" -o output.ms --format ms --force
I'm not creating any folder before that.
Sorry, something went wrong.
@miguelcarcamov I've moved the discussion from #159 into this issue as there are a number of separate concerns that must be addressed.
Successfully merging a pull request may close this issue.
Originally posted by @miguelcarcamov in #159 (comment)
The text was updated successfully, but these errors were encountered: