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meta.yaml
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meta.yaml
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{% set version = "1.28.0" %}
{% set name = "BiSeq" %}
{% set bioc = "3.11" %}
package:
name: 'bioconductor-{{ name|lower }}'
version: '{{ version }}'
source:
url:
- 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
- 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
- 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
md5: b1a4f12d4d33ef04867578d2376a6dc8
build:
number: 0
rpaths:
- lib/R/lib/
- lib/
noarch: generic
requirements:
host:
- 'bioconductor-biobase >=2.48.0,<2.49.0'
- 'bioconductor-biocgenerics >=0.34.0,<0.35.0'
- 'bioconductor-genomeinfodb >=1.24.0,<1.25.0'
- 'bioconductor-genomicranges >=1.40.0,<1.41.0'
- 'bioconductor-globaltest >=5.42.0,<5.43.0'
- 'bioconductor-iranges >=2.22.0,<2.23.0'
- 'bioconductor-rtracklayer >=1.48.0,<1.49.0'
- 'bioconductor-s4vectors >=0.26.0,<0.27.0'
- 'bioconductor-summarizedexperiment >=1.18.0,<1.19.0'
- r-base
- r-betareg
- r-formula
- r-lokern
run:
- 'bioconductor-biobase >=2.48.0,<2.49.0'
- 'bioconductor-biocgenerics >=0.34.0,<0.35.0'
- 'bioconductor-genomeinfodb >=1.24.0,<1.25.0'
- 'bioconductor-genomicranges >=1.40.0,<1.41.0'
- 'bioconductor-globaltest >=5.42.0,<5.43.0'
- 'bioconductor-iranges >=2.22.0,<2.23.0'
- 'bioconductor-rtracklayer >=1.48.0,<1.49.0'
- 'bioconductor-s4vectors >=0.26.0,<0.27.0'
- 'bioconductor-summarizedexperiment >=1.18.0,<1.19.0'
- r-base
- r-betareg
- r-formula
- r-lokern
test:
commands:
- '$R -e "library(''{{ name }}'')"'
about:
home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
license: LGPL-3
summary: 'Processing and analyzing bisulfite sequencing data'
description: 'The BiSeq package provides useful classes and functions to handle and analyze targeted bisulfite sequencing (BS) data such as reduced-representation bisulfite sequencing (RRBS) data. In particular, it implements an algorithm to detect differentially methylated regions (DMRs). The package takes already aligned BS data from one or multiple samples.'
license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/LGPL-3'
extra:
identifiers:
- biotools:biseq
- doi:10.1093/bib/bbv095
parent_recipe:
name: bioconductor-biseq
path: recipes/bioconductor-biseq
version: 1.20.0