forked from bioconda/bioconda-recipes
-
Notifications
You must be signed in to change notification settings - Fork 0
/
meta.yaml
38 lines (36 loc) · 1.69 KB
/
meta.yaml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
{% set version = "1.3.99" %}
{% set name = "BSgenome.Drerio.UCSC.danRer5.masked" %}
{% set bioc = "3.11" %}
package:
name: 'bioconductor-{{ name|lower }}'
version: '{{ version }}'
source:
url:
- 'https://bioconductor.org/packages/{{ bioc }}/data/annotation/src/contrib/{{ name }}_{{ version }}.tar.gz'
- 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
- 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
md5: 8f0623bcbe1743754a56c55599b535f3
build:
number: 4
rpaths:
- lib/R/lib/
- lib/
noarch: generic
requirements:
host:
- 'bioconductor-bsgenome >=1.56.0,<1.57.0'
- 'bioconductor-bsgenome.drerio.ucsc.danrer5 >=1.4.0,<1.5.0'
- r-base
run:
- 'bioconductor-bsgenome >=1.56.0,<1.57.0'
- 'bioconductor-bsgenome.drerio.ucsc.danrer5 >=1.4.0,<1.5.0'
- r-base
- curl
test:
commands:
- '$R -e "library(''{{ name }}'')"'
about:
home: 'https://bioconductor.org/packages/{{ bioc }}/data/annotation/html/{{ name }}.html'
license: Artistic-2.0
summary: 'Full masked genome sequences for Danio rerio (UCSC version danRer5)'
description: 'Full genome sequences for Danio rerio (Zebrafish) as provided by UCSC (danRer5, Jul. 2007) and stored in Biostrings objects. The sequences are the same as in BSgenome.Drerio.UCSC.danRer5, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.'