forked from bioconda/bioconda-recipes
-
Notifications
You must be signed in to change notification settings - Fork 0
/
meta.yaml
110 lines (108 loc) · 2.74 KB
/
meta.yaml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
{% set version = "1.4.5" %}
{% set name = "celda" %}
{% set bioc = "3.11" %}
package:
name: 'bioconductor-{{ name|lower }}'
version: '{{ version }}'
source:
url:
- 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
- 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
- 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
md5: 89243c3357741008acf4ad1be3f908fe
build:
number: 0
rpaths:
- lib/R/lib/
- lib/
# Suggests: testthat, knitr, roxygen2, rmarkdown, biomaRt, covr, BiocManager, BiocStyle, M3DExampleData, TENxPBMCData
requirements:
host:
- 'bioconductor-delayedarray >=0.14.0,<0.15.0'
- 'bioconductor-mast >=1.14.0,<1.15.0'
- 'bioconductor-s4vectors >=0.26.0,<0.27.0'
- 'bioconductor-scater >=1.16.0,<1.17.0'
- 'bioconductor-scran >=1.16.0,<1.17.0'
- 'bioconductor-singlecellexperiment >=1.10.0,<1.11.0'
- 'bioconductor-summarizedexperiment >=1.18.0,<1.19.0'
- r-base
- r-data.table
- r-dbscan
- r-dendextend
- r-digest
- r-doparallel
- r-enrichr
- r-foreach
- r-ggdendro
- r-ggplot2
- r-ggrepel
- r-gridextra
- r-gtable
- r-matrix
- r-matrixstats
- r-mcmcprecision
- r-plyr
- r-proc
- r-rcolorbrewer
- r-rcpp
- r-rcppeigen
- r-reshape2
- r-rtsne
- r-scales
- r-seurat
- r-stringi
- r-stringr
- r-uwot
- r-withr
- libblas
- liblapack
run:
- 'bioconductor-delayedarray >=0.14.0,<0.15.0'
- 'bioconductor-mast >=1.14.0,<1.15.0'
- 'bioconductor-s4vectors >=0.26.0,<0.27.0'
- 'bioconductor-scater >=1.16.0,<1.17.0'
- 'bioconductor-scran >=1.16.0,<1.17.0'
- 'bioconductor-singlecellexperiment >=1.10.0,<1.11.0'
- 'bioconductor-summarizedexperiment >=1.18.0,<1.19.0'
- r-base
- r-data.table
- r-dbscan
- r-dendextend
- r-digest
- r-doparallel
- r-enrichr
- r-foreach
- r-ggdendro
- r-ggplot2
- r-ggrepel
- r-gridextra
- r-gtable
- r-matrix
- r-matrixstats
- r-mcmcprecision
- r-plyr
- r-proc
- r-rcolorbrewer
- r-rcpp
- r-rcppeigen
- r-reshape2
- r-rtsne
- r-scales
- r-seurat
- r-stringi
- r-stringr
- r-uwot
- r-withr
build:
- {{ compiler('c') }}
- {{ compiler('cxx') }}
- make
test:
commands:
- '$R -e "library(''{{ name }}'')"'
about:
home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
license: 'MIT + file LICENSE'
summary: 'CEllular Latent Dirichlet Allocation'
description: 'Utilizing Bayesian hierarchical models to analyze single-cell genomic data.'
license_file: LICENSE