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meta.yaml
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meta.yaml
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{% set version = "1.10.0" %}
{% set name = "chromVAR" %}
{% set bioc = "3.11" %}
package:
name: 'bioconductor-{{ name|lower }}'
version: '{{ version }}'
source:
url:
- 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
- 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
- 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
md5: bd846f329a018a17fdf1896ab74108e9
build:
number: 0
rpaths:
- lib/R/lib/
- lib/
# Suggests: JASPAR2016, BSgenome.Hsapiens.UCSC.hg19, readr, testthat, knitr, rmarkdown, pheatmap, motifmatchr
# SystemRequirements: C++11
requirements:
host:
- 'bioconductor-biocgenerics >=0.34.0,<0.35.0'
- 'bioconductor-biocparallel >=1.22.0,<1.23.0'
- 'bioconductor-biostrings >=2.56.0,<2.57.0'
- 'bioconductor-bsgenome >=1.56.0,<1.57.0'
- 'bioconductor-genomeinfodb >=1.24.0,<1.25.0'
- 'bioconductor-genomicranges >=1.40.0,<1.41.0'
- 'bioconductor-iranges >=2.22.0,<2.23.0'
- 'bioconductor-rsamtools >=2.4.0,<2.5.0'
- 'bioconductor-s4vectors >=0.26.0,<0.27.0'
- 'bioconductor-summarizedexperiment >=1.18.0,<1.19.0'
- 'bioconductor-tfbstools >=1.26.0,<1.27.0'
- r-base
- r-dt
- r-ggplot2
- r-matrix
- r-miniui
- r-nabor
- r-plotly
- r-rcolorbrewer
- r-rcpp
- r-rcpparmadillo
- r-rtsne
- r-shiny
- libblas
- liblapack
run:
- 'bioconductor-biocgenerics >=0.34.0,<0.35.0'
- 'bioconductor-biocparallel >=1.22.0,<1.23.0'
- 'bioconductor-biostrings >=2.56.0,<2.57.0'
- 'bioconductor-bsgenome >=1.56.0,<1.57.0'
- 'bioconductor-genomeinfodb >=1.24.0,<1.25.0'
- 'bioconductor-genomicranges >=1.40.0,<1.41.0'
- 'bioconductor-iranges >=2.22.0,<2.23.0'
- 'bioconductor-rsamtools >=2.4.0,<2.5.0'
- 'bioconductor-s4vectors >=0.26.0,<0.27.0'
- 'bioconductor-summarizedexperiment >=1.18.0,<1.19.0'
- 'bioconductor-tfbstools >=1.26.0,<1.27.0'
- r-base
- r-dt
- r-ggplot2
- r-matrix
- r-miniui
- r-nabor
- r-plotly
- r-rcolorbrewer
- r-rcpp
- r-rcpparmadillo
- r-rtsne
- r-shiny
build:
- {{ compiler('c') }}
- {{ compiler('cxx') }}
- make
test:
commands:
- '$R -e "library(''{{ name }}'')"'
about:
home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
license: 'MIT + file LICENSE'
summary: 'Chromatin Variation Across Regions'
description: 'Determine variation in chromatin accessibility across sets of annotations or peaks. Designed primarily for single-cell or sparse chromatin accessibility data, e.g. from scATAC-seq or sparse bulk ATAC or DNAse-seq experiments.'
license_file: LICENSE
extra:
identifiers:
- biotools:chromvar
parent_recipe:
name: bioconductor-chromvar
path: recipes/bioconductor-chromvar
version: 1.2.0