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meta.yaml
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meta.yaml
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{% set version = "1.4.0" %}
{% set name = "CNVRanger" %}
{% set bioc = "3.11" %}
package:
name: 'bioconductor-{{ name|lower }}'
version: '{{ version }}'
source:
url:
- 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
- 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
- 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
md5: 27cbd62e443d7e0854914750c374fc3e
build:
number: 0
rpaths:
- lib/R/lib/
- lib/
noarch: generic
# Suggests: AnnotationHub, BSgenome.Btaurus.UCSC.bosTau6.masked, BiocStyle, ComplexHeatmap, Gviz, MultiAssayExperiment, TCGAutils, curatedTCGAData, ensembldb, grid, knitr, regioneR, rmarkdown
requirements:
host:
- 'bioconductor-biocparallel >=1.22.0,<1.23.0'
- 'bioconductor-edger >=3.30.0,<3.31.0'
- 'bioconductor-gdsarray >=1.8.0,<1.9.0'
- 'bioconductor-gdsfmt >=1.24.0,<1.25.0'
- 'bioconductor-genomeinfodb >=1.24.0,<1.25.0'
- 'bioconductor-genomicranges >=1.40.0,<1.41.0'
- 'bioconductor-iranges >=2.22.0,<2.23.0'
- 'bioconductor-limma >=3.44.0,<3.45.0'
- 'bioconductor-raggedexperiment >=1.12.0,<1.13.0'
- 'bioconductor-s4vectors >=0.26.0,<0.27.0'
- 'bioconductor-snprelate >=1.22.0,<1.23.0'
- 'bioconductor-summarizedexperiment >=1.18.0,<1.19.0'
- r-base
- r-data.table
- r-lattice
- r-plyr
- r-qqman
- r-rappdirs
- r-reshape2
run:
- 'bioconductor-biocparallel >=1.22.0,<1.23.0'
- 'bioconductor-edger >=3.30.0,<3.31.0'
- 'bioconductor-gdsarray >=1.8.0,<1.9.0'
- 'bioconductor-gdsfmt >=1.24.0,<1.25.0'
- 'bioconductor-genomeinfodb >=1.24.0,<1.25.0'
- 'bioconductor-genomicranges >=1.40.0,<1.41.0'
- 'bioconductor-iranges >=2.22.0,<2.23.0'
- 'bioconductor-limma >=3.44.0,<3.45.0'
- 'bioconductor-raggedexperiment >=1.12.0,<1.13.0'
- 'bioconductor-s4vectors >=0.26.0,<0.27.0'
- 'bioconductor-snprelate >=1.22.0,<1.23.0'
- 'bioconductor-summarizedexperiment >=1.18.0,<1.19.0'
- r-base
- r-data.table
- r-lattice
- r-plyr
- r-qqman
- r-rappdirs
- r-reshape2
test:
commands:
- '$R -e "library(''{{ name }}'')"'
about:
home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
license: Artistic-2.0
summary: 'Summarization and expression/phenotype association of CNV ranges'
description: 'The CNVRanger package implements a comprehensive tool suite for CNV analysis. This includes functionality for summarizing individual CNV calls across a population, assessing overlap with functional genomic regions, and association analysis with gene expression and quantitative phenotypes.'