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TODO.txt
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TODO.txt
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Remember to list any API changes below in `doc/source/api_changes.txt`.
Version 0.17
------------
* Update RELEASE.txt regarding Azure Pipelines after making changes to
scikit-image-wheels repo.
* Finalize ``skimage.future.graph`` API.
* Finalize ``skimage.future.manual_segmentation`` API.
Version 0.18
------------
Version 0.19
------------
* Set ``start_label`` to 1 in ``slic`` and remove the DeprecationWarning.
* In ``skimage/draw/draw.py`` remove ``circle'' and related tests.
* In ``skimage/segmentation/morphsnakes.py`` remove ``circle_level_set'' and related tests.
* Also make sure to look in the function ``_init_level_set``
* In ``skimage/morphology/_flood_fill.py`` replace the deprecated parameter
in flood_fill() ``inplace`` with ``in_place`` and update the tests.
* In ``skimage/filters/rank/generic.py'' remove tophat and bottomhat (See #3614)
* Remove the definition of `skimage.util.pad` and
skimage/util/tests/test_arraypad.py.
* Remove the warnings in ``skimage/filters/ridges.py`` from sato and hessian
functions.
* In ``skimage/color/colorconv.py``, remove `rgb2grey` and `grey2rgb`.
* In ``skimage/color/colorconv.py``, remove the deprecation warnings
from `rgb2gray`.
* In ``skimage/transform/radon_transform.py``, remove ``deprate_kwarg``
decoration from ``iradon``.
* In ``skimage/measure/profile.py``, set default mode to 'reflect' in
`profile_line` and remove the deprecation warning.
* In ``skimage/_shared/utils.py``, raise a ValueError instead of the
warning when order > 0 and input array is bool in _set_order.
* In ``skimage/transform/_warps.py``, raise a ValueError instead of the
warning when anti_aliasing is True and input array is bool in resize.
* In ``skimage/feature/__init__.py``, remove `register_translation`.
* In ``skimage.measure._marching_cube_lewiner.py``, remove
``marching_cube_lewiner``.
* In ``skimage.measure._marching_cube_classic.py``, remove
``marching_cube_classic``.
* In ``skimage/color/colorconv.py``, remove the `alpha`and `is_rgb`
arguments and the associated deprecation warnings from `gray2rgb`.
* In ``skimage/color/colorlabel.py``, remove the `change_default_value`
decorator from `label2rgb` and set `bg_label` default value to 0.
* In ``skimage/feature/__init__.py``, remove `masked_register_translation`.
Version 0.20
------------
* In ``skimage/feature/peak.py``, remove the `indices` argument and
the decorator `remove_arg`.
* In ``skimage.measure._find_contours.py``, remove the `deprecate_kwarg`
decorator from `find_contours`.
* In ``skimage/feature/corner.py``, change `order` default to 'rc' in
`structure_tensor`.
* In ``skimage/feature/corner.py``, remove the `structure_tensor_eigvals`
function.
* Remove deprecated qt plugins, i.e. `qt_plugin.py`, `qt_plugin.ini` and
`skivi.py` in `skimage/io/_plugins`.
* Remove enrirely the folder skimage/scripts containing skivi app.
Remove `scripts` related lines in MANIFEST.in, .codecov.yml, appveyor.yml,
setup.py
* Remove viewer app in `skimage/viewer` and remove `./viewer_examples/`.
Remove `viewer_examples` occurences in `tools/check_sdist.py` and
`tools/travis/script.sh`
Version 1.0
-----------
* consider removing the argument `coordinates` in
`skimage.segmentation.active_contour`, which has not effect.
Other
-----
* Check whether imread wheels are available, then re-enable testing imread
on macOS. See https://github.com/scikit-image/scikit-image/pull/3898
* When ``numpy`` is set to > 1.16, one may simplify the implementation of
of `feature.blob_log` using the vectorized version of ``np.logspace``.
* Remove conditional import of ``scipy.fft`` in ``skimage._shared.fft`` once
the minimum supported version of ``scipy`` reaches 1.4.
* When ``numpy`` is set to >= 1.16, simplify ``draw.line_nd`` by using the
vectorized version of ``np.linspace``.
* Monitor when multibuild devel gets merged into master for python 3.8
compatibility https://github.com/matthew-brett/multibuild/issues/284
and update osx_install to point to the correct branch
* Remove pillow version related warning for MPO file format in
`io._plugins.pil_plugin.imread` when upgrading pillow min version to
6.0.0
* Remove pillow version related warning for CVE when pillow > 7.1.0 in
`skimage/io/_plugins/pil_plugin.py` and `skimage/io/collection.py`.
* When ``numpy`` is set to >= 1.16, remove the warning assertion in
``skimage/exposure/tests/test_exposure.py::test_rescale_nan_warning``
regarding ``invalid value encountered in reduce``.
regarding ``Passing `np.nan` to mean no clipping in np.clip``.
* Remove direct allocation of ``output`` from ``skimage/filters/_gaussian.py``,
when ``scipy`` upgrades to 1.1.
* Specify atol value in `cg` calls and remove condition on scipy's version in
``skimage/segmentation/random_walker_segmentation.py`` when ``scipy`` upgrades
to 1.1.
* Remove '--verify-repo=none' in tlmgr calls in ``tools/travis/osx_install.sh``,
when texlive 2020 is available.
* Once NumPy is set to >= 1.17, consider removing
``skimage.morphology._util._fast_pad``.
* When sphinx-gallery>=0.9.0, remove the thumbnail_size in
doc/source/conf.py as the default value will be comparable (#4801).