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ProvModel.py
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ProvModel.py
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from datetime import datetime
import uuid
import logging
import configuration
import os.path
import couchdb
import getpass
from typing import Any
import collections
from Operators import jsonify
import os
import psutil
''' GDB part '''
from py2neo import Graph
graph = Graph(password = 'password')
#graph.delete_all()
''' modelling part '''
failure = False
# to disable all logging
#logging.disable(logging.CRITICAL)
# to re-enable all logging
logging.disable(logging.NOTSET)
# logger for the current script
logger_name = 'Model_Logger'
# log file for the whole experiment
log_file = 'workflow.log'
# create the loggers that you want to use in this file
# params : logger_name, output_file
info = configuration.logger_info(logger_name, log_file)
info_start = configuration.logger_info_start(logger_name, log_file)
info_end = configuration.logger_info_end(logger_name, log_file)
deb = configuration.logger_debug(logger_name, log_file)
warn = configuration.logger_warn(logger_name, log_file)
err = configuration.logger_error(logger_name, log_file)
fatalerr = configuration.logger_fatal(logger_name, log_file)
def elasticuser(id, name, time):
#print 'curl XPUT 127.0.0.1:9200/provenance/users/' + str(id) + ' -d\' {"time": "' + str(time) + '", "name": "' + str(name) + '"}\' '
os.system('curl --silent --output XPUT 127.0.0.1:9200/userindex/users/' + str(id) + ' -d\' {"time": "' + str(time) + '", "name": "' + str(name) + '"}\' ')
class User:
def __init__(self):
self.id = uuid.uuid4()
self.name = getpass.getuser()
msg = {"event": "USR-INVK", "id": str(self.id), "name": str(self.name), 'time': str( datetime.utcnow() )}
deb.debug(jsonify(msg))
elasticuser(msg['id'], msg['name'], msg['time'])
USER = User()
class Data:
def __init__(self):
self.id = None
self.ref = None
self.user = None
def elasticobject(id, type, value, user, memory, cpu, time, error):
#print 'curl XPUT 127.0.0.1:9200/objectindex/modules/' + str(id) + ' -d\' {"time": "' + str(time) + '", "type": "' + str(type) + '", "value": "' + str(value) + '", "user": "' + str(user) + '", "memory": ' + str(memory) + ', "cpu": ' + str(cpu) + ', "error": "' + str(error) + '" }\' '
os.system('curl --silent --output XPUT 127.0.0.1:9200/objectindex/objects/' + str(id) + ' -d\' {"time": "' + str(time) + '", "type": "' + str(type) + '", "value": "' + str(value) + '", "user": "' + str(user) + '", "memory": ' + str(memory) + ', "cpu": ' + str(cpu) + ', "error": "' + str(error) + '" }\' ')
class Object(Data):
def __init__(self, reference):
# type: (Any) -> None
self.id = uuid.uuid4()
self.user = USER.id
if failure is True:
# precondition management
pass
else:
# if all preconditions passed
try:
self.ref = reference
msg = {
'event': 'OB-CRTN',
'id': str(self.id),
'type': str(type(reference)),
'value': str(reference),
'user': str(USER.id),
'memory': (psutil.virtual_memory()[2])*(.000001),
'cpu': (psutil.cpu_percent()),
'time': str(datetime.utcnow()),
'label': 'object',
'error': 'success'
}
deb.debug(jsonify(msg))
elasticobject(msg['id'], msg['type'], msg['value'], msg['user'], msg['memory'], msg['cpu'], msg['time'], msg['error'])
''' GDB part '''
props = ['VALUE:\"' + msg['value'] + '\"', 'id:\"' + msg['id'] + '\"', 'type:\"' + msg['type'] + '\"', 'user:\"' + msg['user'] + '\"', 'error:\"null\"', 'time:\"' + str(msg['time']) + '\"', 'memory:\"' + str(msg['memory']) + '\"', 'cpu:\"' + str(msg['cpu']) + '\"', 'label:\"' + str(msg['label']) + '\"']
propsQuery = ','.join(props)
#print propsQuery
query = 'create (n:Object{' + propsQuery + '})'
graph.run(query)
except Exception as e:
# if any further error occurs somehow
#pid = os.getpid()
#py = psutil.Process(pid)
#memoryUse = py.memory_info()[0] / 2. ** 30
msg = {
'event': 'OB-CRTN',
'id': str(self.id),
'type': str(type(reference)),
'value': str(reference),
'user': str(USER.id),
'error': 'OCE',
'memory': (psutil.virtual_memory()[2])*(.000001),
'cpu': (psutil.cpu_percent()),
'time': str(datetime.utcnow()),
'label': 'object'
}
err.error(jsonify(msg))
elasticobject(msg['id'], msg['type'], msg['value'], msg['user'], msg['memory'], msg['cpu'],
msg['time'], msg['error'])
''' GDB part '''
props = ['VALUE:\"' + msg['value'] + '\"', 'id:\"' + msg['id'] + '\"', 'type:\"' + msg['type'] + '\"', 'user:\"' + msg['user'] + '\"', 'error:\"' + msg['error'] + '\"', 'time:\"' + str(msg['time']) + '\"', 'memory:\"' + str(msg['memory']) + '\"', 'cpu:\"' + str(msg['cpu']) + '\"', 'label:\"' + str(msg['label']) + '\"']
propsQuery = ','.join(props)
#print propsQuery
query = 'create (n:Object{' + propsQuery + '})'
graph.run(query)
def elasticfile(id, user, source, memory, cpu, time, error):
#print 'curl XPUT 127.0.0.1:9200/fileindex/files/' + str(id) + ' -d\' {"time": "' + str(time) + '", "user": "' + str(user) + '", "source": "' + str(source) + '", "memory": ' + str(memory) + ', "cpu": ' + str(cpu) + ', "error": "' + str(error) + '" }\' '
os.system('curl --silent --output XPUT 127.0.0.1:9200/fileindex/files/' + str(id) + ' -d\' {"time": "' + str(time) + '", "user": "' + str(user) + '", "source": "' + str(source) + '", "memory": ' + str(memory) + ', "cpu": ' + str(cpu) + ', "error": "' + str(error) + '" }\' ')
class File(Data):
def __init__(self, f):
# type: (file) -> None
self.id = uuid.uuid4()
self.user = USER.id
if failure is True:
# precondition management
pass
elif not isinstance(f, file):
# if file not found
msg = {
'event': 'FIL-CRTN',
'id': str(self.id),
'user': str(USER.id),
'error': 'FCE',
'memory': (psutil.virtual_memory()[2])*(.000001),
'cpu': (psutil.cpu_percent()),
'time': str(datetime.utcnow()),
'label': 'file'
}
err.error(jsonify(msg))
elasticfile(msg['id'], msg['user'], 'InvalidFile', msg['memory'], msg['cpu'], msg['time'], msg['error'])
''' GDB part this part is never executed
props = ['SOURCE:\"' + msg['source'] + '\"', 'id:\"' + msg['id'] + '\"', 'type:\"' + msg['type'] + '\"',
'user:\"' + msg['user'] + '\"', 'error:\"' + msg['error'] + '\"', 'time:\"' + str(msg['time']) + '\"',
'memory:\"' + str(msg['memory']) + '\"', 'cpu:\"' + str(msg['cpu']) + '\"']
propsQuery = ','.join(props)
# print propsQuery
query = 'create (n:File{' + propsQuery + '})'
graph.run(query)
'''
else:
# if all exceptions passed
try:
self.ref = f
msg = {
'event': 'FIL-CRTN',
'id': str(self.id),
'type': str(type(f)),
'source': str(f.name),
'user': str(USER.id),
'memory': (psutil.virtual_memory()[2])*(.000001),
'cpu': (psutil.cpu_percent()),
'time': str(datetime.utcnow()),
'label': 'file',
'error': 'success'
}
deb.debug(jsonify(msg))
elasticfile(msg['id'], msg['user'], msg['source'] ,msg['memory'], msg['cpu'], msg['time'], msg['error'])
''' GDB part '''
props = ['SOURCE:\"' + msg['source'] + '\"', 'id:\"' + msg['id'] + '\"', 'type:\"' + msg['type'] + '\"', 'user:\"' + msg['user'] + '\"', 'error:\"null\"', 'time:\"' + str(msg['time']) + '\"',
'memory:\"' + str(msg['memory']) + '\"', 'cpu:\"' + str(msg['cpu']) + '\"', 'label:\"' + str(msg['label']) + '\"']
propsQuery = ','.join(props)
#print propsQuery
query = 'create (n:File{' + propsQuery + '})'
graph.run(query)
except Exception as e:
# if any further exception occurs
msg = {
'event': 'FIL-CRTN',
'id': str(self.id),
'type': str(type(f)),
'source': str(f.name),
'user': str(USER.id),
'error': 'OE',
'memory': (psutil.virtual_memory()[2])*(.000001),
'cpu': (psutil.cpu_percent()),
'time': str(datetime.utcnow()),
'label': 'file'
}
err.error(jsonify(msg))
elasticfile(msg['id'], msg['user'], msg['source'], msg['memory'], msg['cpu'], msg['time'], msg['error'])
''' GDB part '''
props = ['SOURCE:\"' + msg['source'] + '\"', 'id:\"' + msg['id'] + '\"', 'type:\"' + msg['type'] + '\"',
'user:\"' + msg['user'] + '\"', 'error:\"' + msg['error'] + '\"', 'time:\"' + str(msg['time']) + '\"',
'cpu:\"' + str(msg['cpu']) + '\"', 'memory:\"' + str(msg['memory']) + '\"', 'label:\"' + str(msg['label']) + '\"']
propsQuery = ','.join(props)
# print propsQuery
query = 'create (n:File{' + propsQuery + '})'
graph.run(query)
class Document(Data):
def __init__(self, document):
# type: (couchdb.Document) -> None
self.id = uuid.uuid4()
self.user = USER.id
if failure is True:
# precondition management
pass
elif not isinstance(document, couchdb.Document):
msg = {
'event': 'DOC-CRTN',
'id': str(self.id),
'user': str(USER.id),
'error': 'error',
'memory': (psutil.virtual_memory()[2])*(.000001),
'cpu': (psutil.cpu_percent()),
'time': str(datetime.utcnow()),
'label': 'document'
}
err.error(jsonify(msg))
else:
# if all exceptions passed
try:
self.ref = document
msg = {
'event': 'DOC-CRTN',
'id': str(self.id),
'type': str(type(document)),
'address': str(document),
'user': str(USER.id),
'memory': (psutil.virtual_memory()[2])*(.000001),
'cpu': (psutil.cpu_percent()),
'time': str(datetime.utcnow()),
'label': 'document'
}
deb.debug(jsonify(msg))
except Exception as e:
# if any further exception occurs
msg = {
'event': 'DOC-CRTN',
'id': str(self.id),
'type': str(type(document)),
'address': str(document),
'user': str(USER.id),
'error': 'error',
'memory': (psutil.virtual_memory()[2])*(.000001),
'cpu': (psutil.cpu_percent()),
'time': str(datetime.utcnow()),
'label': 'document'
}
err.error(jsonify(msg))
def elasticmodule(id, time, name, user, memory_run, memory_init, cpu_run, cpu_init, duration_run, duration_init, error):
#print 'curl XPUT 127.0.0.1:9200/moduleindex/modules/' + str(id) + ' -d\' {"time": "' + str(time) + '", "name": "' + str(name) + '", "user": "' + str(user) + '", "memory_run": ' + str(memory_run) + ', "memory_init": ' + str(memory_init) + ', "cpu_run": ' + str(cpu_run) + ', "cpu_init": ' + str(cpu_init) + ', "duration_run": "' + str(duration_run) + '", "duration_init": "' + str(duration_init) + '", "error": "' + str(error) + '" }\' '
os.system('curl --silent --output XPUT 127.0.0.1:9200/moduleindex/modules/' + str(id) + ' -d\' {"time": "' + str(time) + '", "name": "' + str(name) + '", "user": "' + str(user) + '", "memory_run": ' + str(memory_run) + ', "memory_init": ' + str(memory_init) + ', "cpu_run": ' + str(cpu_run) + ', "cpu_init": ' + str(cpu_init) + ', "duration_run": "' + str(duration_run) + '", "duration_init": "' + str(duration_init) + '", "error": "' + str(error) + '" }\' ')
class Module:
def logStart(self):
msg = {
'event': 'MOD-STRT',
'id': str(self.id),
'user': str(USER.id)
}
deb.debug(jsonify(msg))
def logEnd(self):
msg = {
'event': 'MOD-END',
'id': str(self.id),
'user': str(USER.id)
}
deb.debug(jsonify(msg))
def body(self):
"""
:param interfaceParam:
:return:
"""
def __init__(self, *args):
start_time = datetime.utcnow()
self.id = uuid.uuid4()
self.user = USER.id
self.P = args
try:
param_ids = []
for i in args:
if isinstance(i, Object) or isinstance(i, File) or isinstance(i, Document):
param_ids.append(str(i.id))
else:
param_ids.append(str(i))
msg = {
'p@': param_ids,
'event': 'MOD-CRTN',
'id': str(self.id),
'name': str(self.__class__.__name__),
'user': str(USER.id),
'memory_init': (psutil.virtual_memory()[2])*(.000001),
'cpu_init': (psutil.cpu_percent()),
'duration_init': str(datetime.utcnow()-start_time),
'time': str(datetime.utcnow()),
'cpu_run': 0,
'memory_run': 0,
'duration_run': "00:00:00.000000",
'label': 'module',
'error': 'success'
}
deb.debug(jsonify(msg))
elasticmodule(msg['id'], msg['time'], msg['name'], msg['user'], msg['memory_run'], msg['memory_init'], msg['cpu_run'], msg['cpu_init'], msg['duration_run'], msg['duration_init'], msg['error'])
''' GDB part '''
props = ['NAME:\"' + msg['name'] + '\"', 'id:\"' + msg['id'] + '\"',
'user:\"' + msg['user'] + '\"', 'error:\"null\"', 'time:\"' + str(msg['time']) + '\"', 'memory_init:\"' + str(msg['memory_init']) + '\"',
'cpu_init:\"' + str(msg['cpu_init']) + '\"', 'duration_init:\"' + str(msg['duration_init']) + '\"',
'duration_run:\"' + str(msg['duration_run']) + '\"', 'memory_run:\"' + str(msg['memory_run']) + '\"', 'cpu_run:\"' + str(msg['cpu_run']) + '\"',
'label:\"' + str(msg['label']) + '\"']
propsQuery = ','.join(props)
#print propsQuery
query = 'create (n:Module{' + propsQuery + '})'
graph.run(query)
''' relationships '''
for uninqid in param_ids:
# match (n:Object{id:uniqid}), (m:Module{id:id})
# create (n)-[:IN]-> (m)
query = ' match (n),(m) where n.id = \"' + uninqid + '\" and m.id = \"' + msg['id'] + '\" create (n)-[:IN]-> (m)'
#print query
graph.run(query)
except Exception as e:
param_ids = []
for i in args:
if isinstance(i, Object) or isinstance(i, File) or isinstance(i, Document):
param_ids.append(str(i.id))
else:
param_ids.append(str(i))
msg = {
'p@': param_ids,
'event': 'MOD-CRTN',
'id': str(self.id),
'name': str(self.__class__.__name__),
'user': str(USER.id),
'error': 'MIE',
'memory_init': (psutil.virtual_memory()[2])*(.000001),
'cpu_init': (psutil.cpu_percent()),
'duration_init': str(datetime.utcnow()-start_time),
'time': str(datetime.utcnow()),
'cpu_run': 0,
'memory_run': 0,
'duration_run': "00:00:00.000000",
'label': 'module'
}
#print msg
err.error(jsonify(msg))
elasticmodule(msg['id'], msg['time'], msg['name'], msg['user'], msg['memory_run'], msg['memory_init'],
msg['cpu_run'], msg['cpu_init'], msg['duration_run'], msg['duration_init'], msg['error'])
''' GDB part '''
props = ['NAME:\"' + msg['name'] + '\"', 'id:\"' + msg['id'] + '\"',
'user:\"' + msg['user'] + '\"', 'error:\"' + msg['error'] + '\"', 'time:\"' + str(msg['time']) + '\"',
'memory_init:\"' + str(msg['memory_init']) + '\"', 'cpu_init:\"' + str(msg['cpu_init']) + '\"',
'duration_init:\"' + str(msg['duration_init']) + '\"',
'cpu_run:\"' + str(msg['cpu_run']) + '\"', 'memory_run:\"' + str(msg['memory_run']) + '\"', 'duration_run:\"' + str(msg['duration_run']) + '\"',
'label:\"' + str(msg['label']) + '\"']
propsQuery = ','.join(props)
#print propsQuery
query = 'create (n:Module{' + propsQuery + '})'
graph.run(query)
def run(self, when = True, false_return = None):
start_time = datetime.utcnow()
if when is True:
try:
self.logStart()
self.outgoing = self.body()
ret_ids = []
if isinstance(self.outgoing, collections.Iterable):
for i in self.outgoing:
if isinstance(i, Object) or isinstance(i, File) or isinstance(i, Document):
ret_ids.append(str(i.id))
else:
if isinstance(self.outgoing, Object) or isinstance(self.outgoing, File) or isinstance(self.outgoing,
Document):
ret_ids.append(str(self.outgoing.id))
msg = {
'o@': ret_ids,
'event': 'BODY-TRU',
'id': str(self.id),
'name': str(self.__class__.__name__),
'user': str(USER.id),
'duration_run': str(datetime.utcnow()-start_time),
'memory_run': (psutil.virtual_memory()[2])*(.000001),
'cpu_run': (psutil.cpu_percent()),
'time_run': str(datetime.utcnow()),
'error': 'success'
}
deb.debug(jsonify(msg))
elasticmodule(msg['id'], msg['time_run'], msg['name'], msg['user'], msg['memory_run'], 0,
msg['cpu_run'], 0, msg['duration_run'], "00:00:00.000000", msg['error'])
''' relationships '''
for uninqid in ret_ids:
# match (n:Object{id:uniqid}), (m:Module{id:id})
# create (m)-[:OUT]-> (n)
query = ' match (n),(m) where n.id = \"' + uninqid + '\" and m.id = \"' + msg['id'] + '\" create (m)-[:OUT]-> (n) ' + 'set m.duration_run = \"' + str(msg['duration_run']) + '\"' + ', m.cpu_run = \"' + str(msg['cpu_run']) + '\"' + ', m.memory_run = \"' + str(msg['memory_run']) + '\"' + ', m.time_run = \"' + str(msg['time_run']) + '\"'
#print query
graph.run(query)
self.logEnd()
return self.outgoing
except Exception as e:
msg = {
'event': 'MOD-RUN',
'id': str(self.id),
'name': str(self.__class__.__name__),
'user': str(USER.id),
'error': 'MRE',
'duration_run': str(datetime.utcnow() - start_time),
'memory_run': (psutil.virtual_memory()[2])*(.000001),
'cpu_run': (psutil.cpu_percent()),
'time_run': str(datetime.utcnow()),
'label': 'module'
}
err.error(jsonify(msg))
elasticmodule(msg['id'], msg['time_run'], msg['name'], msg['user'], msg['memory_run'], 0,
msg['cpu_run'], 0, msg['duration_run'], "00:00:00.000000", msg['error'])
''' GDB part '''
#props = ['NAME:\"' + msg['name'] + '\"', 'id:\"' + msg['id'] + '\"',
# 'user:\"' + msg['user'] + '\"', 'error:\"' + msg['error'] + '\"', 'time:\"' + str(msg['time']) + '\"']
#propsQuery = ','.join(props)
# print propsQuery
query = 'match (n:Module{id:\"' + msg['id'] + '\"}) set n.error = \"' + str(msg['error']) + '\"' + ', n.duration_run = \"' + str(msg['duration_run']) + '\"' + ', n.cpu_run = \"' + str(msg['cpu_run']) + '\"' + ', n.memory_run = \"' + str(msg['memory_run']) + '\"' + ', n.time_run = \"' + str(msg['time_run']) + '\"' + ', n.label = \"' + str(msg['label']) + '\"'
#print query
graph.run(query)
else:
'''not using this part for implementation'''
ret_ids = []
for i in false_return:
ret_ids.append(str(i))
msg = {
'o@': ret_ids,
'event': 'BODY-FLS',
'id': str(self.id),
'name': str(self.__class__.__name__),
'user': str(USER.id),
'duration': str(datetime.utcnow() - start_time),
'memory': (psutil.virtual_memory()[2])*(.000001),
'cpu': (psutil.cpu_percent()),
'time': str(datetime.utcnow()),
'error': 'success'
}
deb.debug(jsonify(msg))
return false_return