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DNA Pattern Matching - DNAobama

Tugas Besar 3 IF2211 Strategi Algoritma Semester II Tahun 2021/2022 Penerapan String Matching dan Regular Expression dalam DNA Pattern Matching

Authors

Nama NIM
Muhammad Garebaldhie ER Rahman 13520029
Rayhan Kinan Muhammad 13520065
Marchotridyo 13520119

General Information

DNAobama is a website that provides features to upload DNA sequence of diseases to the system. Users also can upload their DNA sequence and check if the user have a certain disease or not. Users can also search for past tests by date or by the disease itself. The deployed version of the website can be accsessed DNAobama

Application demo

Adding a disease to the database

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Do a DNA test

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Search for past tests

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Program Requirement

  1. Node JS

Tech Stack Used

  1. React
  2. Express JS
  3. Sequelize ORM

How to Use

If you want to check the webiste use this: DNAobama

If you want to run it locally just download the repository using git clone https://github.com/rayhankinan/Tubes3_13520029 and make sure you have node js installed on your machine

  1. Frontend
  • move to frontend directory using cd frontend
  • run npm install
  • After install all the dependencies run npm run dev to start it locally
  1. Backend
  • move to backend directory using cd backend
  • run npm install
  • After install all the dependencies run npm run start or npm run start:dev for development

Folder Structure

├── README.md
├── backend  
│   ├── app
│   │   ├── algorithms
│   │   │   ├── bm.algorithm.js
│   │   │   ├── kmp.algorithm.js        
│   │   │   └── ssaha.algorithm.js      
│   │   ├── config
│   │   │   └── db.config.js
│   │   ├── controllers
│   │   │   ├── disease.controller.js   
│   │   │   └── prediction.controller.js
│   │   ├── example.env
│   │   ├── models
│   │   │   ├── disease.model.js    
│   │   │   ├── index.js
│   │   │   └── prediction.model.js 
│   │   ├── routes
│   │   │   ├── disease.routes.js   
│   │   │   ├── prediction.routes.js
│   │   │   └── user.routes.js      
│   │   └── server.js
│   ├── package-lock.json
│   ├── package.json
│   └── src
├── frontend
│   ├── index.html       
│   ├── package-lock.json
│   ├── package.json     
│   ├── src
│   │   ├── App.jsx
│   │   ├── assets
│   │   │   └── images
│   │   │       ├── dna-1.jpg
│   │   │       ├── home-1.png
│   │   │       ├── home-2.png
│   │   │       ├── home-3.png
│   │   │       └── upload.png
│   │   ├── favicon.svg
│   │   ├── index.css
│   │   ├── lib.jsx
│   │   ├── logo.svg
│   │   ├── main.jsx
│   │   └── pages
│   │       ├── DnaTest
│   │       │   ├── DnaTest.jsx
│   │       │   └── DnaTest.module.css
│   │       ├── GeneticDisorder
│   │       │   ├── GeneticDisorder.jsx
│   │       │   └── GeneticDisorder.module.css
│   │       ├── Home
│   │       │   ├── Home.jsx
│   │       │   └── Home.module.css
│   │       ├── Loading.jsx
│   │       ├── Loading.module.css
│   │       ├── SearchTest
│   │       │   ├── SearchTest.jsx
│   │       │   └── SearchTest.module.css
│   │       └── index.js
│   ├── vercel.json
│   └── vite.config.js
└── tc
    ├── disease_1.txt
    ├── disease_2.txt
    ├── invalid.txt
    ├── user_1.txt
    └── user_2.txt