Cannot draw molecule which includes an atom with a [!#X] query (for any X)

[ShangChien]

Describe the bug
m = Chem.MolFromSmiles('CO*.C1=CC=NC=C1 |c:2,4,6,m:2:3.5.4|') can work well, but execute m with error:

full error :

[12:36:57] 

****
Pre-condition Violation
bad query type
Violation occurred on line 1169 in file C:\rdkit\build\temp.win-amd64-cpython-38\Release\rdkit\Code\GraphMol\MolDraw2D\DrawMol.cpp
Failed Expression: atom.getQuery()->getDescription() == "AtomOr"
****

Output exceeds the [size limit](command:workbench.action.openSettings?[). Open the full output data [in a text editor](command:workbench.action.openLargeOutput?64f7c3ce-2006-40ac-a17b-79e30aced92d)
---------------------------------------------------------------------------
RuntimeError                              Traceback (most recent call last)
File d:\conda\lib\site-packages\IPython\core\formatters.py:343, in BaseFormatter.__call__(self, obj)
    341     method = get_real_method(obj, self.print_method)
    342     if method is not None:
--> 343         return method()
    344     return None
    345 else:

File d:\conda\lib\site-packages\rdkit\Chem\Draw\IPythonConsole.py:155, in _toPNG(mol)
    153   highlightAtoms = []
    154 kekulize = kekulizeStructures
--> 155 return Draw._moltoimg(mol, molSize, highlightAtoms, "", returnPNG=True, kekulize=kekulize,
    156                       drawOptions=drawOptions)

File d:\conda\lib\site-packages\rdkit\Chem\Draw\__init__.py:489, in _moltoimg(mol, sz, highlights, legend, returnPNG, drawOptions, **kwargs)
    486   d2d.DrawMolecule(mc, legend=legend or "", highlightAtoms=highlights or [],
    487                    highlightBonds=bondHighlights)
    488 else:
--> 489   d2d.DrawMolecule(mc, legend=legend or "", highlightAtoms=highlights or [])
    490 d2d.FinishDrawing()
    491 if returnPNG:
RuntimeError: Pre-condition Violation
	bad query type
...
	Violation occurred on line 1169 in file Code\GraphMol\MolDraw2D\DrawMol.cpp
	Failed Expression: atom.getQuery()->getDescription() == "AtomOr"
	RDKIT: 2022.09.4
	BOOST: 1_78
<rdkit.Chem.rdchem.Mol at 0x27c4e1fe7b0>

Expected behavior

Version：rdkit-2022.9.4

[ShangChien]

#5980 related issue

[greglandrum]

#5980 related issue

That issue is not related to this one

[greglandrum]

Confirmed. we will look into this

[ShangChien]

For poor my code review skill, i can only provide user's info: For above whole enumrate mols process, rdkit-2022.3.* work very well. 2022.9.* may not stable for it.
but still thanks for rdkit team !

[greglandrum]

Here's a shorter reproducible, the problem isn't actually in the drawing code. I think it's in the changes made as part of the fix for #5930

In [23]: qm = Chem.MolFromSmarts('[!#1]')

In [24]: d2d = Draw.MolDraw2DSVG(-1,-1)

In [25]: d2d.DrawMolecule(qm)
[06:35:19]

****
Pre-condition Violation
bad query type
Violation occurred on line 1169 in file D:\bld\rdkit_1674051513102\work\Code\GraphMol\MolDraw2D\DrawMol.cpp
Failed Expression: atom.getQuery()->getDescription() == "AtomOr"
****

---------------------------------------------------------------------------
RuntimeError                              Traceback (most recent call last)
Cell In [25], line 1
----> 1 d2d.DrawMolecule(qm)

RuntimeError: Pre-condition Violation
        bad query type
        Violation occurred on line 1169 in file Code\GraphMol\MolDraw2D\DrawMol.cpp
        Failed Expression: atom.getQuery()->getDescription() == "AtomOr"
        RDKIT: 2022.09.4
        BOOST: 1_78

[greglandrum]

This was fixed by #6055