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Here's a ChEMBL structure which demonstrates the problem:
CHEMBL3612237 RDKit 2D 14 15 0 0 0 0 0 0 0 0999 V2000 -0.6828 -1.6239 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.6828 0.0000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 0.6090 0.5905 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1.9007 0.0000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1.9007 -1.6239 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 0.6090 -2.3805 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1.9007 1.3471 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 -0.6828 1.3471 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 0.6090 2.0668 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.6319 1.4849 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.5072 2.6784 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 -1.7280 0.9964 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 -0.6828 0.0000 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0 1.9007 0.0000 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 1 6 1 0 2 3 1 0 3 4 1 0 4 5 1 0 5 6 1 0 4 7 1 0 2 8 1 0 8 9 1 0 7 9 1 0 3 10 1 1 10 11 1 0 10 12 2 0 2 13 1 1 4 14 1 1 M END
And the drawing without bond indices: The drawing with bond or atom indices is mostly empty, so I'm not going to reproduce it here.
If I displace the two hydrogens very slightly so that they aren't directly overlapping the atoms that they are bound to the problem goes away.
The text was updated successfully, but these errors were encountered:
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Here's a ChEMBL structure which demonstrates the problem:
And the drawing without bond indices:
The drawing with bond or atom indices is mostly empty, so I'm not going to reproduce it here.
If I displace the two hydrogens very slightly so that they aren't directly overlapping the atoms that they are bound to the problem goes away.
The text was updated successfully, but these errors were encountered: