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We've generated a CSV file named master_file.csv, which contains gene-related data, including gene name, coverage, mean expression, total expression, and RSP area. Before proceeding with further analyses or sharing the dataset, we must ensure this CSV is correct and contains accurate data.
Steps to reproduce
Clone the repository and navigate to the relevant directory
Check the file master_file.csv
Use any relevant scripts or methods to regenerate the CSV
Compare the regenerated CSV with the provided master_file.csv
Expected behavior
The CSV should accurately represent the gene data as per our analysis scripts. All entries should match expectations, and there should be no missing or erroneous values.
Tasks
Review the structure and headers of the CSV to ensure they match expectations.
Check for any missing or NaN values.
Compare the new CSV with the previous one generated with the old program.
Verify that expression and area values are within expected ranges.
Confirm that coverage values lie between 0% and 100%.
The text was updated successfully, but these errors were encountered:
Description
We've generated a CSV file named
master_file.csv
, which contains gene-related data, including gene name, coverage, mean expression, total expression, and RSP area. Before proceeding with further analyses or sharing the dataset, we must ensure this CSV is correct and contains accurate data.Steps to reproduce
master_file.csv
master_file.csv
Expected behavior
The CSV should accurately represent the gene data as per our analysis scripts. All entries should match expectations, and there should be no missing or erroneous values.
Tasks
The text was updated successfully, but these errors were encountered: