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Verify correctness of generated master_file.csv #12

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cytronicoder opened this issue Oct 17, 2023 · 0 comments · Fixed by #14
Closed
5 tasks

Verify correctness of generated master_file.csv #12

cytronicoder opened this issue Oct 17, 2023 · 0 comments · Fixed by #14
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help wanted Extra attention is needed

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@cytronicoder
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Description

We've generated a CSV file named master_file.csv, which contains gene-related data, including gene name, coverage, mean expression, total expression, and RSP area. Before proceeding with further analyses or sharing the dataset, we must ensure this CSV is correct and contains accurate data.

Steps to reproduce

  1. Clone the repository and navigate to the relevant directory
  2. Check the file master_file.csv
  3. Use any relevant scripts or methods to regenerate the CSV
  4. Compare the regenerated CSV with the provided master_file.csv

Expected behavior

The CSV should accurately represent the gene data as per our analysis scripts. All entries should match expectations, and there should be no missing or erroneous values.

Tasks

  • Review the structure and headers of the CSV to ensure they match expectations.
  • Check for any missing or NaN values.
  • Compare the new CSV with the previous one generated with the old program.
  • Verify that expression and area values are within expected ranges.
  • Confirm that coverage values lie between 0% and 100%.
@cytronicoder cytronicoder added the help wanted Extra attention is needed label Oct 17, 2023
@cytronicoder cytronicoder self-assigned this Oct 17, 2023
@cytronicoder cytronicoder linked a pull request Oct 17, 2023 that will close this issue
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