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Adjust percentage of classified reads #71

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hoelzer opened this issue Mar 3, 2021 · 1 comment · Fixed by #73
Closed

Adjust percentage of classified reads #71

hoelzer opened this issue Mar 3, 2021 · 1 comment · Fixed by #73
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@RaverJay

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@hoelzer
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hoelzer commented Mar 3, 2021

Currently, the report shows e.g. 100% SARS-CoV-2 and 0% human even if there are only 10 reads classified as SARS-CoV-2 (and the rest is unclassified).

Thus, it is good to have the absolute numbers now as well but would it not be better to report the percentages in accordance with the Krona plot? E.g. 4 % SARS-Cov-2 if there is 96 % unclassified?
@RaverJay
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RaverJay commented Mar 4, 2021

Agreed, on it

@RaverJay RaverJay mentioned this issue Mar 4, 2021
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Include unclassified in kraken2 stats RaverJay/poreCov
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@hoelzer @RaverJay