train.py

import random
import argparse
import time
import logging
import yaml
from datetime import datetime
from torch.nn.parallel import DistributedDataParallel as DDP
from timm.data import Dataset, create_loader, resolve_data_config
from timm.utils import *
from timm.optim import create_optimizer
from timm.scheduler import create_scheduler

import torch
import torch.nn as nn
import torchvision.utils
import math
import ckdn


torch.backends.cudnn.benchmark = True
has_apex = False


# The first arg parser parses out only the --config argument, this argument is used to
# load a yaml file containing key-values that override the defaults for the main parser below
config_parser = parser = argparse.ArgumentParser(description='Training Config', add_help=False)
parser.add_argument('-c', '--config', default='', type=str, metavar='FILE',
                    help='YAML config file specifying default arguments')


parser = argparse.ArgumentParser(description='Training')
# Dataset / Model parameters
parser.add_argument('data', metavar='DIR',
                    help='path to dataset')
parser.add_argument('--model', default='resnet', type=str, metavar='MODEL',
                    help='Name of model to train (default: "countception"')
parser.add_argument('--pretrained', action='store_true', default=False,
                    help='Start with pretrained version of specified network (if avail)')
parser.add_argument('--initial-checkpoint', default='', type=str, metavar='PATH',
                    help='Initialize model from this checkpoint (default: none)')
parser.add_argument('--resume', default='', type=str, metavar='PATH',
                    help='Resume full model and optimizer state from checkpoint (default: none)')
parser.add_argument('--no-resume-opt', action='store_true', default=False,
                    help='prevent resume of optimizer state when resuming model')
parser.add_argument('--num-classes', type=int, default=1000, metavar='N',
                    help='number of label classes (default: 1000)')
parser.add_argument('--gp', default='avg', type=str, metavar='POOL',
                    help='Type of global pool, "avg", "max", "avgmax", "avgmaxc" (default: "avg")')
parser.add_argument('--img-size', type=int, default=None, metavar='N',
                    help='Image patch size (default: None => model default)')
parser.add_argument('--mean', type=float, nargs='+', default=None, metavar='MEAN',
                    help='Override mean pixel value of dataset')
parser.add_argument('--std', type=float, nargs='+', default=None, metavar='STD',
                    help='Override std deviation of of dataset')
parser.add_argument('--interpolation', default='', type=str, metavar='NAME',
                    help='Image resize interpolation type (overrides model)')
parser.add_argument('-b', '--batch-size', type=int, default=32, metavar='N',
                    help='input batch size for training (default: 32)')
parser.add_argument('--drop', type=float, default=0.0, metavar='DROP',
                    help='Dropout rate (default: 0.)')
# Optimizer parameters
parser.add_argument('--opt', default='sgd', type=str, metavar='OPTIMIZER',
                    help='Optimizer (default: "sgd"')
parser.add_argument('--opt-eps', default=1e-8, type=float, metavar='EPSILON',
                    help='Optimizer Epsilon (default: 1e-8)')
parser.add_argument('--momentum', type=float, default=0.9, metavar='M',
                    help='SGD momentum (default: 0.9)')
parser.add_argument('--weight-decay', type=float, default=0.0001,
                    help='weight decay (default: 0.0001)')
# Learning rate schedule parameters
parser.add_argument('--sched', default='step', type=str, metavar='SCHEDULER',
                    help='LR scheduler (default: "step"')
parser.add_argument('--lr', type=float, default=0.01, metavar='LR',
                    help='learning rate (default: 0.01)')
parser.add_argument('--warmup-lr', type=float, default=0.0001, metavar='LR',
                    help='warmup learning rate (default: 0.0001)')
parser.add_argument('--min-lr', type=float, default=1e-5, metavar='LR',
                    help='lower lr bound for cyclic schedulers that hit 0 (1e-5)')
parser.add_argument('--epochs', type=int, default=200, metavar='N',
                    help='number of epochs to train (default: 2)')
parser.add_argument('--start-epoch', default=None, type=int, metavar='N',
                    help='manual epoch number (useful on restarts)')
parser.add_argument('--decay-epochs', type=int, default=5, metavar='N',
                    help='epoch interval to decay LR')
parser.add_argument('--warmup-epochs', type=int, default=3, metavar='N',
                    help='epochs to warmup LR, if scheduler supports')
parser.add_argument('--cooldown-epochs', type=int, default=10, metavar='N',
                    help='epochs to cooldown LR at min_lr, after cyclic schedule ends')
parser.add_argument('--decay-rate', '--dr', type=float, default=0.1, metavar='RATE',
                    help='LR decay rate (default: 0.1)')
# Augmentation parameters
parser.add_argument('--color-jitter', type=float, default=0.4, metavar='PCT',
                    help='Color jitter factor (default: 0.4)')
parser.add_argument('--aa', type=str, default=None, metavar='NAME',
                    help='Use AutoAugment policy. "v0" or "original". (default: None)'),
parser.add_argument('--reprob', type=float, default=0., metavar='PCT',
                    help='Random erase prob (default: 0.)')
parser.add_argument('--remode', type=str, default='const',
                    help='Random erase mode (default: "const")')
parser.add_argument('--recount', type=int, default=1,
                    help='Random erase count (default: 1)')
parser.add_argument('--mixup', type=float, default=0.0,
                    help='mixup alpha, mixup enabled if > 0. (default: 0.)')
parser.add_argument('--mixup-off-epoch', default=0, type=int, metavar='N',
                    help='turn off mixup after this epoch, disabled if 0 (default: 0)')
parser.add_argument('--smoothing', type=float, default=0.1,
                    help='label smoothing (default: 0.1)')
# Batch norm parameters (only works with gen_efficientnet based models currently)
parser.add_argument('--bn-tf', action='store_true', default=False,
                    help='Use Tensorflow BatchNorm defaults for models that support it (default: False)')
parser.add_argument('--bn-momentum', type=float, default=None,
                    help='BatchNorm momentum override (if not None)')
parser.add_argument('--bn-eps', type=float, default=None,
                    help='BatchNorm epsilon override (if not None)')
# Model Exponential Moving Average
parser.add_argument('--model-ema', action='store_true', default=False,
                    help='Enable tracking moving average of model weights')
parser.add_argument('--model-ema-force-cpu', action='store_true', default=False,
                    help='Force ema to be tracked on CPU, rank=0 node only. Disables EMA validation.')
parser.add_argument('--model-ema-decay', type=float, default=0.9998,
                    help='decay factor for model weights moving average (default: 0.9998)')
# Misc
parser.add_argument('--seed', type=int, default=42, metavar='S',
                    help='random seed (default: 42)')
parser.add_argument('--log-interval', type=int, default=50, metavar='N',
                    help='how many batches to wait before logging training status')
parser.add_argument('--recovery-interval', type=int, default=0, metavar='N',
                    help='how many batches to wait before writing recovery checkpoint')
parser.add_argument('-j', '--workers', type=int, default=4, metavar='N',
                    help='how many training processes to use (default: 1)')
parser.add_argument('--num-gpu', type=int, default=1,
                    help='Number of GPUS to use')
parser.add_argument('--save-images', action='store_true', default=False,
                    help='save images of input bathes every log interval for debugging')
parser.add_argument('--amp', action='store_true', default=False,
                    help='use NVIDIA amp for mixed precision training')
parser.add_argument('--sync-bn', action='store_true',
                    help='enabling apex sync BN.')
parser.add_argument('--no-prefetcher', action='store_true', default=False,
                    help='disable fast prefetcher')
parser.add_argument('--output', default='', type=str, metavar='PATH',
                    help='path to output folder (default: none, current dir)')
parser.add_argument('--eval-metric', default='prec1', type=str, metavar='EVAL_METRIC',
                    help='Best metric (default: "prec1"')
parser.add_argument('--tta', type=int, default=0, metavar='N',
                    help='Test/inference time augmentation (oversampling) factor. 0=None (default: 0)')
parser.add_argument("--local_rank", default=0, type=int)
parser.add_argument('--ref', action='store_true', default=False,
                    help='use noise ref')


def _parse_args():
    # Do we have a config file to parse?
    args_config, remaining = config_parser.parse_known_args()
    if args_config.config:
        with open(args_config.config, 'r') as f:
            cfg = yaml.safe_load(f)
            parser.set_defaults(**cfg)

    # The main arg parser parses the rest of the args, the usual
    # defaults will have been overridden if config file specified.
    args = parser.parse_args(remaining)

    # Cache the args as a text string to save them in the output dir later
    args_text = yaml.safe_dump(args.__dict__, default_flow_style=False)
    return args, args_text


def main():
    setup_default_logging()
    args, args_text = _parse_args()

    args.prefetcher = not args.no_prefetcher
    args.distributed = False
    if 'WORLD_SIZE' in os.environ:
        args.distributed = int(os.environ['WORLD_SIZE']) > 1
        if args.distributed and args.num_gpu > 1:
            logging.warning('Using more than one GPU per process in distributed mode is not allowed. Setting num_gpu to 1.')
            args.num_gpu = 1

    args.device = 'cuda:0'
    args.world_size = 1
    args.rank = 0  # global rank
    if args.distributed:
        args.num_gpu = 1
        args.device = 'cuda:%d' % args.local_rank
        torch.cuda.set_device(args.local_rank)
        torch.distributed.init_process_group(backend='nccl', init_method='env://')
        args.world_size = torch.distributed.get_world_size()
        args.rank = torch.distributed.get_rank()
    assert args.rank >= 0

    if args.distributed:
        logging.info('Training in distributed mode with multiple processes, 1 GPU per process. Process %d, total %d.'
                     % (args.rank, args.world_size))
    else:
        logging.info('Training with a single process on %d GPUs.' % args.num_gpu)

    torch.manual_seed(args.seed + args.rank)
    model = ckdn.model()
    if args.local_rank == 0:
        logging.info('Model %s created, param count: %d' %
                     (args.model, sum([m.numel() for m in model.parameters()])))

    data_config = resolve_data_config(vars(args), model=model, verbose=args.local_rank == 0)

    if args.num_gpu > 1:
        if args.amp:
            logging.warning(
                'AMP does not work well with nn.DataParallel, disabling. Use distributed mode for multi-GPU AMP.')
            args.amp = False
        model = nn.DataParallel(model, device_ids=list(range(args.num_gpu))).cuda()
    else:
        model = torch.nn.parallel.DistributedDataParallel(model.cuda(),device_ids=[args.local_rank], output_device=args.local_rank, broadcast_buffers=True,find_unused_parameters=True)

    optimizer = create_optimizer(args, model)

    use_amp = False

    # optionally resume from a checkpoint
    resume_state = {}
    resume_epoch = None
    resume_state = None

    if args.distributed:
        if args.sync_bn:
            try:
                if has_apex:
                    model = convert_syncbn_model(model)
                else:
                    model = torch.nn.SyncBatchNorm.convert_sync_batchnorm(model)
                if args.local_rank == 0:
                    logging.info('Converted model to use Synchronized BatchNorm.')
            except Exception as e:
                logging.error('Failed to enable Synchronized BatchNorm. Install Apex or Torch >= 1.1')
        model = DDP(model, device_ids=[args.local_rank], find_unused_parameters=True)  # can use device str in Torch >= 1.1

    lr_scheduler, num_epochs = create_scheduler(args, optimizer)
    train_data = 'train'
    val_data = 'val'

    dataset_train = Dataset(args.data,train_data)

    collate_fn = None
    loader_train = create_loader(
        dataset_train,
        input_size=data_config['input_size'],
        batch_size=args.batch_size,
        is_training=True,
        use_prefetcher=args.prefetcher,
        interpolation=data_config['interpolation'],
        mean=data_config['mean'],
        std=data_config['std'],
        num_workers=args.workers,
        distributed=args.distributed,
    )

    dataset_eval = Dataset(args.data,val_data)

    loader_eval = create_loader(
        dataset_eval,
        input_size=data_config['input_size'],
        batch_size=args.batch_size,
        is_training=False,
        use_prefetcher=args.prefetcher,
        interpolation=data_config['interpolation'],
        mean=data_config['mean'],
        std=data_config['std'],
        num_workers=args.workers,
        distributed=False,#args.distributed,
    )


    eval_metric = args.eval_metric
    best_metric = None
    best_epoch = None
    saver = None
    output_dir = ''
    if args.local_rank == 0:
        output_base = args.output if args.output else './output'
        exp_name = '-'.join([
            datetime.now().strftime("%Y%m%d-%H%M%S"),
            args.model,
            str(data_config['input_size'][-1])
        ])
        output_dir = get_outdir(output_base, 'train', exp_name)
        decreasing = True if eval_metric == 'loss' else False
        saver = CheckpointSaver(checkpoint_dir=output_dir, decreasing=decreasing)
        with open(os.path.join(output_dir, 'args.yaml'), 'w') as f:
            f.write(args_text)

    try:
        for epoch in range(num_epochs):
            if args.distributed:
                loader_train.sampler.set_epoch(epoch)
            train_metrics = train_epoch(
                epoch, model, loader_train, optimizer, args,
                lr_scheduler=lr_scheduler, saver=saver, output_dir=output_dir,
                use_amp=use_amp, model_ema=None)
            if True:#epoch%2==1:
                eval_metrics = validate(model, loader_eval, args)

               # if model_ema is not None and not args.model_ema_force_cpu:
               #     ema_eval_metrics = validate(
               #         model_ema.ema, loader_eval, validate_loss_fn, args, log_suffix=' (EMA)')
               #     eval_metrics = ema_eval_metrics

                if lr_scheduler is not None:
                    # step LR for next epoch
                    lr_scheduler.step(epoch + 1, eval_metrics[eval_metric])
    
                update_summary(
                    epoch, train_metrics, eval_metrics, os.path.join(output_dir, 'summary.csv'),
                    write_header=best_metric is None)

                if saver is not None:
                    # save proper checkpoint with eval metric
                    save_metric = eval_metrics[eval_metric]
                    best_metric, best_epoch = saver.save_checkpoint(
                        model, optimizer, args,
                        epoch=epoch, model_ema=None, metric=save_metric, use_amp=use_amp)

    except KeyboardInterrupt:
        pass
    if best_metric is not None:
        logging.info('*** Best metric: {0} (epoch {1})'.format(best_metric, best_epoch))

def loss_fn(o1,o2,o3,o4,t1,t2,epoch):
    t3 = 1.0/(1+torch.pow(10,(t1-t2)*1000/400))
    d1 = ((o1-t1)**2).mean()
    d2 = ((o2-t1)**2).mean()
    d3 = ((o3-t3)**2).mean()*0.5
    d4 = ((o4)**2).mean()*30.0
    if epoch < 10:
        return d3
    else:
        return d1+d2+d4



def train_epoch(epoch, model, loader, optimizer, args,
        lr_scheduler=None, saver=None, output_dir='', use_amp=False, model_ema=None):

    if args.prefetcher and args.mixup > 0 and loader.mixup_enabled:
        if args.mixup_off_epoch and epoch >= args.mixup_off_epoch:
            loader.mixup_enabled = False

    batch_time_m = AverageMeter()
    data_time_m = AverageMeter()
    losses_m = AverageMeter()

    model.train()

    end = time.time()
    last_idx = len(loader) - 1
    num_updates = epoch * len(loader)
    for batch_idx, (input, target) in enumerate(loader):
        last_batch = batch_idx == last_idx
        data_time_m.update(time.time() - end)
        if not args.prefetcher:
            input, target = input.cuda(), target.cuda()
            if args.mixup > 0.:
                lam = 1.
                if not args.mixup_off_epoch or epoch < args.mixup_off_epoch:
                    lam = np.random.beta(args.mixup, args.mixup)
                input.mul_(lam).add_(1 - lam, input.flip(0))
                target = mixup_target(target, args.num_classes, lam, args.smoothing)
        output = model(input)
        loss = loss_fn(output[:,0], output[:,1], output[:,2], output[:,3], target[:,0], target[:,1], epoch)
        if not args.distributed:
            losses_m.update(loss.item(), input.size(0))

        optimizer.zero_grad()
        if use_amp:
            with amp.scale_loss(loss, optimizer) as scaled_loss:
                scaled_loss.backward()
        else:
            loss.backward()
        optimizer.step()

        torch.cuda.synchronize()
        if model_ema is not None:
            model_ema.update(model)
        num_updates += 1

        batch_time_m.update(time.time() - end)
        if last_batch or batch_idx % args.log_interval == 0:
            lrl = [param_group['lr'] for param_group in optimizer.param_groups]
            lr = sum(lrl) / len(lrl)

            if args.distributed:
                reduced_loss = reduce_tensor(loss.data, args.world_size)
                losses_m.update(reduced_loss.item(), input.size(0))

            if args.local_rank == 0:
                logging.info(
                    'Train: {} [{:>4d}/{} ({:>3.0f}%)]  '
                    'Loss: {loss.val:>9.6f} ({loss.avg:>6.4f})  '
                    'Time: {batch_time.val:.3f}s, {rate:>7.2f}/s  '
                    '({batch_time.avg:.3f}s, {rate_avg:>7.2f}/s)  '
                    'LR: {lr:.3e}  '
                    'Data: {data_time.val:.3f} ({data_time.avg:.3f})'.format(
                        epoch,
                        batch_idx, len(loader),
                        100. * batch_idx / last_idx,
                        loss=losses_m,
                        batch_time=batch_time_m,
                        rate=input.size(0) * args.world_size / batch_time_m.val,
                        rate_avg=input.size(0) * args.world_size / batch_time_m.avg,
                        lr=lr,
                        data_time=data_time_m))

                if args.save_images and output_dir:
                    torchvision.utils.save_image(
                        input,
                        os.path.join(output_dir, 'train-batch-%d.jpg' % batch_idx),
                        padding=0,
                        normalize=True)

        if saver is not None and args.recovery_interval and (
                last_batch or (batch_idx + 1) % args.recovery_interval == 0):
            saver.save_recovery(
                model, optimizer, args, epoch, model_ema=model_ema, use_amp=use_amp, batch_idx=batch_idx)

        if lr_scheduler is not None:
            lr_scheduler.step_update(num_updates=num_updates, metric=losses_m.avg)

        end = time.time()
        # end for

    if hasattr(optimizer, 'sync_lookahead'):
        optimizer.sync_lookahead()

    return OrderedDict([('loss', losses_m.avg)])


def validate(model, loader, args, log_suffix=''):
    batch_time_m = AverageMeter()
    losses_m = AverageMeter()
    prec1_m = AverageMeter()
    prec5_m = AverageMeter()

    model.eval()
    outputs = []
    targets = []
    scores = []
    end = time.time()
    last_idx = len(loader) - 1
    with torch.no_grad():
        for batch_idx, (input, target) in enumerate(loader):
            last_batch = batch_idx == last_idx
            if not args.prefetcher:
                input = input.cuda()
                target = target.cuda()

            output = model(input)[:,0]
            target = target[:,0]
            if isinstance(output, (tuple, list)):
                output = output[0]

            # augmentation reduction
            reduce_factor = args.tta
            if reduce_factor > 1:
                output = output.unfold(0, reduce_factor, reduce_factor).mean(dim=2)
                target = target[0:target.size(0):reduce_factor]
            outputs.append(output.cpu().numpy())
            targets.append(target.cpu().numpy())
        outputs = np.concatenate(outputs, axis=0).squeeze()#.reshape((-1,4)).transpose()
        targets = np.concatenate(targets, axis=0).squeeze()#.reshape((-1,4)).transpose()
        outputs = outputs.reshape((25,-1))
        targets = targets.reshape((25,-1))
        SRCCs = 0
        PLCCs = 0
        for i in range(25):
            SRCC,PLCC = compute_metrics(outputs[i], targets[i], is_np=True)
            SRCCs+=SRCC
            PLCCs+=PLCC
        SRCCs/=0.25
        PLCCs/=0.25
        if args.local_rank==0:
            print('SRCCs={:.2f},PLCCs={:.2f}'.format(SRCCs,PLCCs))
        scores = SRCCs+PLCCs


    metrics = OrderedDict([('loss', scores), ('prec1', scores), ('prec5', scores)])

    return metrics


if __name__ == '__main__':
    main()