load_dam duplicating reads?

[brelwill]

Using load_dam, one monitor file is loading with NAs and duplicate reads for a given timepoint, see attached files for examples. Nothing obviously wrong in the .txt file when viewing in notepad, excel, or reading into R with fread. Any ideas where this would be coming from?

monitorfile_sample.txt

load_error_sample.txt

Metadata

library(damr)
metadata <- fread("metadata_MASTER.csv")
metadata

Linking

metadata <- link_dam_metadata(metadata, result_dir = DATA_DIR)
metadata

Loading for Sleepr- LD

library(sleepr)
LD_dt <- load_dam(metadata[LD_or_DD == "LD" & status == "OK"], FUN = sleepr::sleep_dam_annotation)

[qgeissmann]

thanks for reporting the issue! Any chance you can provide your metadata file, so I can reproduce it?

[brelwill]

I included a larger chunk of the monitor file to include the beginning. Let me know what you find out!

Monitor33a_truncated.txt
metadata_sample.xlsx