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visxhclust.Rmd
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visxhclust.Rmd
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---
title: "visxhclust Shiny app tutorial"
output: rmarkdown::html_vignette
vignette: >
%\VignetteIndexEntry{visxhclust Shiny app tutorial}
%\VignetteEngine{knitr::rmarkdown}
%\VignetteEncoding{UTF-8}
---
```{r, include = FALSE}
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>"
)
```
This is a simple visual tutorial on the basic loop of the visxhclust Shiny app -- note that almost every tab in the application has a corresponding help icon with more information and tips. To open the Shiny app you need to run:
```{r run, eval=FALSE}
library(visxhclust)
run_app()
```
## Steps for simple iteration
### Step 1: Loading data and setting parameters
![Step 1](load_data.gif)
### Step 2: View clustering results
![Step 2](view_results.gif)
### Step 3: Evaluate
![Step 3](evaluate.gif)
### Step 4: Change parameters again
![Step 4](iterate.gif)
### Step 5: Review results
![Step 5](review_results.gif)