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I accidently used the wrong link to download the ncbi.tre file from resources/ and this was the HTML github webpage rather than the tree file itself.
When running MaltExtract, I got the error below and this didn't report a recognisable error code. Therefore the pipeline just hung rather than cleanly exiting (until I investigated).
Sep 29, 2020 3:40:04 PM RMAExtractor.RMAExtractor main
INFO: Setting up Taxon Name and Taxon ID maps
Exception in thread "main" java.lang.ArrayIndexOutOfBoundsException: 0
at org.forester.phylogeny.Phylogeny.createInstanceFromNhxString(Phylogeny.java:312)
at NCBI_MapReader.NCBI_TreeReader.<init>(NCBI_TreeReader.java:76)
at RMAExtractor.RMAExtractor.main(RMAExtractor.java:92)
Would it be possible to add a validation check of the resources files, and if they are not that MaltExtract reports a useful error message and exit code?
The text was updated successfully, but these errors were encountered:
I accidently used the wrong link to download the
ncbi.tre
file fromresources/
and this was the HTML github webpage rather than the tree file itself.When running MaltExtract, I got the error below and this didn't report a recognisable error code. Therefore the pipeline just hung rather than cleanly exiting (until I investigated).
Would it be possible to add a validation check of the resources files, and if they are not that MaltExtract reports a useful error message and exit code?
The text was updated successfully, but these errors were encountered: