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Update docs with samtools: error while loading shared libraries: libcrypto.so.1.0.0 fix #335

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mikej888 opened this issue May 26, 2021 · 2 comments
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documentation enhancement New feature or request R2.1 riboviz release 2.1 workshop-2021-07

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@mikej888
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mikej888 commented May 26, 2021

When deploying RiboViz within a new CentOS 7 (2009) VM I did:

$ conda install -y -c bioconda samtools
$ samtools --version
samtools: error while loading shared libraries: libcrypto.so.1.0.0: cannot open shared object file: No such file or directory
$ conda list | grep -in sam
65:pysam                     0.15.3           py37hda2845c_1    bioconda
73:samtools                  1.7                           1    bioconda

Googling revealed the link merenlab/anvio#1479. I tried the fix:

$ conda install -c bioconda samtools=1.9 --force-reinstall
$ samtools --version
samtools 1.9

and it works. This is the same issue that @canuse documented for #271, So this is not a Ubuntu-specific issue.

docs/user/install.md should be updated with this fix.

@mikej888
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As of commit ce28de4, develop now has docs/user/install.md with the above update.

@mikej888
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As of commit 4408f56, develop now has docs/user/install.md with use of conda install -y -c bioconda samtools=1.9 by default to avoid need for having to apply troubleshooting.

@mikej888 mikej888 closed this as completed Jun 2, 2021
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documentation enhancement New feature or request R2.1 riboviz release 2.1 workshop-2021-07
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