forked from agordon/fastx_toolkit
/
configure.ac
115 lines (103 loc) · 3.47 KB
/
configure.ac
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
# Copyright (C) 2008-2013 Assaf Gordon <assafgordon@gmail.com>
#
# This file is free software; as a special exception the author gives
# unlimited permission to copy and/or distribute it, with or without
# modifications, as long as this notice is preserved.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY, to the extent permitted by law; without even the
# implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
AC_INIT([FASTX Toolkit],
[0.0.14],
[Assaf Gordon assafgordon@gmail.com],
[fastx_toolkit])
AC_CONFIG_AUX_DIR(config)
AC_CONFIG_MACRO_DIR([m4])
AM_CONFIG_HEADER(config.h)
AM_INIT_AUTOMAKE([dist-bzip2])
AC_PROG_CC
AC_PROG_CXX
AC_PROG_LIBTOOL
AX_C_LONG_LONG
AX_CXX_HEADER_STDCXX_TR1
AX_CXX_COMPILE_STDCXX_11([noext],[optional])
dnl if test "$ax_cv_cxx_stdcxx_tr1" != yes; then
dnl AC_MSG_ERROR([Your version of gcc does not support the 'std::tr1' standard. Recommended gcc version is 4.1.2 or later. Please use a newer gcc version, or try to download the pre-compiled binaries from the fastx-toolkit website.])
dnl fi
PKG_CHECK_MODULES([GTEXTUTILS],[gtextutils])
dnl --enable-wall
EXTRA_CHECKS="-Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror"
AC_ARG_ENABLE(wall,
[ --enable-wall Enable many common GCC warnings (-Wall,-Wextra, -Werror etc., default enabled)],
[case "${enableval}" in
yes) wall=true ;;
no) wall=false ;;
*) AC_MSG_ERROR(bad value ${enableval} for --enable-wall) ;;
esac],[wall=true])
if test "$wall" = "true"
then
CFLAGS="${CFLAGS} ${EXTRA_CHECKS}"
CXXFLAGS="${CXXFLAGS} ${EXTRA_CHECKS}"
fi
dnl --enable-debug
AC_ARG_ENABLE(debug,
[ --enable-debug Enable debug mode (default enabled)],
[case "${enableval}" in
yes) debug=true ;;
no) debug=false ;;
*) AC_MSG_ERROR(bad value ${enableval} for --enable-debug) ;;
esac],[debug=true])
if test "$debug" = "true"
then
CFLAGS="${CFLAGS} -DDEBUG -g -O1"
CXXFLAGS="${CXXFLAGS} -DDEBUG -g -O1"
else
CFLAGS="${CFLAGS} -O3"
CXXFLAGS="${CXXFLAGS} -O3"
fi
dnl 'all-static' marco copied from subversion's configure.ac
dnl Check for --enable-all-static option
AC_ARG_ENABLE(all-static,
AS_HELP_STRING([--enable-all-static],
[Build completely static (standalone) binaries.]),
[
if test "$enableval" = "yes" ; then
LT_LDFLAGS="-all-static $LT_LDFLAGS"
elif test "$enableval" != "no" ; then
AC_MSG_ERROR([--enable-all-static doesn't accept argument])
fi
])
AC_SUBST(LT_LDFLAGS)
AC_CONFIG_FILES([
Makefile
doc/Makefile
m4/Makefile
src/Makefile
src/libfastx/Makefile
src/fastx_clipper/Makefile
src/fastq_to_fasta/Makefile
src/fastx_quality_stats/Makefile
src/fastq_quality_converter/Makefile
src/fastx_trimmer/Makefile
src/fastq_quality_filter/Makefile
src/fastq_quality_trimmer/Makefile
src/fastx_artifacts_filter/Makefile
src/fastx_reverse_complement/Makefile
src/fastx_collapser/Makefile
src/fastx_uncollapser/Makefile
src/seqalign_test/Makefile
src/fasta_formatter/Makefile
src/fasta_nucleotide_changer/Makefile
src/fastx_renamer/Makefile
src/fastq_masker/Makefile
galaxy/Makefile
galaxy/tools/Makefile
galaxy/tools/fastx_toolkit/Makefile
galaxy/test-data/Makefile
galaxy/static/Makefile
galaxy/static/fastx_icons/Makefile
galaxy/tool-data/Makefile
scripts/Makefile
build_scripts/Makefile
])
AC_OUTPUT