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Citing abagen

Note

We strongly encourage you to use the automatically-generated methods reports <usage_reporting> built into abagen, which will provide a list of citations based on your selected processing options!

We're thrilled you've found abagen useful in your work! Please cite the following manuscripts when referencing your use of the toolbox:

  1. Markello, RD, Arnatkevic̆iūtė, A, Poline, J-B, Fulcher, BD, Fornito, A, & Misic, B. (2021). Standardizing workflows in imaging transcriptomics with the abagen toolbox. Biorxiv. doi:`10.1101/2021.07.08.451635 <https://doi.org/ 10.1101/2021.07.08.451635>`__
  2. Arnatkevic̆iūtė, A, Fulcher, BD, & Fornito, A. (2019). A practical guide to linking brain-wide gene expression and neuroimaging data. NeuroImage, 189, 353-367. doi:`10.1016/j.neuroimage.2019.01.011 <https://doi.org/10.1016/ j.neuroimage.2019.01.011>`__
  3. Hawrylycz, MJ, Lein, ES, Guillozet-Bongaarts, AL, Shen, EH, Ng, L, Miller, JA, …, & Jones, AR. (2012). An anatomically comprehensive atlas of the adult human brain transcriptome. Nature, 489(7416), 391–399. doi:`10.1038/nature11405 <https://doi.org/10.1038/nature11405>`__

Additionally, to cite the specific version of the toolbox used in your analyses you can use the following Zenodo reference:

abagen Available from: 10.5281/zenodo.3451463.

Note that this will always point to the most recent abagen release; for older releases please refer to the Zenodo listing <https://zenodo.org/search? page=1&size=20&q=conceptrecid:%223451463%22&sort=-version&all_versions=True>__.

For more information about why citing software is important please refer to this article from the Software Sustainability Institute.