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DESCRIPTION
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DESCRIPTION
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Package: single
Type: Package
Title: Accurate consensus sequence from nanopore reads of a gene library
Version: 1.3.4
Authors@R:
c(person(given = "Rocio",
family = "Espada",
role = c("aut", "cre"),
email = "rocio.espada@espci.fr",
comment = c(ORCID = "0000-0003-3829-473X")))
biocViews: Software, Sequencing
Depends:
R (>= 4.0)
Description: Accurate consensus sequence from nanopore reads of a DNA gene library.
SINGLe corrects for systematic errors in nanopore sequencing reads of
gene libraries and it retrieves true consensus sequences of variants
identified by a barcode, needing only a few reads per variant. More
information in preprint doi: https://doi.org/10.1101/2020.03.25.007146.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Imports: Biostrings, BiocGenerics, dplyr, GenomicAlignments,IRanges, methods, reshape2, rlang, Rsamtools, stats, stringr, tidyr, utils
Suggests: BiocStyle, knitr, rmarkdown
VignetteBuilder: knitr
RoxygenNote: 7.2.3