help with headers and --data-binary?

[vjcitn]

Wonderful package. Can you give some guidance on how to present a query with headers as given in this curl excerpt

-H 'Accept-Encoding: gzip, deflate, br' -H 'Content-Type: application/json' -H 'Accept: application/json' -H 'Connection: keep-alive' -H 'DNT: 1' -H 'Origin: https://pharos-api.ncats.io' --data-binary

It isn't at all clear to me how to pass the --data-binary element.

I wrote the headers as

hlist =  list(
`Accept-Encoding`=c("gzip", "deflate", "br"),
`Content-Type`="application/json",
`Accept`="application/json",
`Connection`="keep-alive",
`DNT`="1",
`Origin`="https://pharos-api.ncats.io/graphql")

but server returns 500 on

library(ghql)
hlist =  list(
`Accept-Encoding`=c("gzip", "deflate", "br"),
`Content-Type`="application/json",
`Accept`="application/json",
`Connection`="keep-alive",
`DNT`="1",
`Origin`="https://pharos-api.ncats.io/graphql")


con = GraphqlClient$new(url="https://pharos-api.ncats.io/graphql", headers=hlist)

con$load_schema(schema_file="pharos_introspectionSchema.json")

qry = Query$new()

qry$query('myd', '{
interactingProteins{
  targets(filter: { associatedTarget: "PPBP" }) {
    targets(top:5) {
      name
      sym
      ppiTargetInteractionDetails {
        dataSources:ppitypes
        score
        interaction_type
        evidence
        p_ni
        p_int
        p_wrong
      }
    }
  }
}
}')

qry
xx = con$exec(qry$queries$myd)

[sckott]

So you have successfully made a curl request on the command line/shell with that command above?

You shouldn't need to pass --data-binary.

Your accept encoding header should be a string, all headers should be strings of length 1., should be "deflate, gzip, br"

After you fix that header, now I get a 400 error. If I try your query in the https://pharos-api.ncats.io/graphql gui it does not work. So it seems your query is not valid as well