changes in plots

.Rbuildignore

@@ -0,0 +1,2 @@
+.DS_Store
+README.Rmd

.gitignore

@@ -1,12 +1,11 @@
 .Rproj.user
 .Rhistory
 .RData
-.Rbuildignore
 r_avis.Rproj
 localNotes.md
 localScripts.R
 anRpackage.Rcheck
 rAvis.Rcheck
 #rAvis_*.tar.gz
 rAvis-Ex.R
-bugs
+

DESCRIPTION

@@ -2,7 +2,7 @@ Package: rAvis
 Encoding: UTF-8
 Type: Package
 Title: Interface to the bird-watching datasets at proyectoavis.com
-Version: 0.1.1
+Version: 0.1.2
 Date: 2014-03-05
 BugReports: https://github.com/ropensci/rAvis/issues
 Author: Javier González Hernández <javigzz@yahoo.es>, Sara Varela González

R/plotFunctions.R

@@ -116,7 +116,11 @@ avisMap<-function(obs, label = '', maptype = 'admin')
 {
   .avisCacheReturnOrSetup(".ravis_img_ipeninsula", function(){
 
+<<<<<<< HEAD
       brick (system.file('extdata/peninsula.tif', package="rAvis"))
+=======
+      brick ( system.file('tif/peninsula.tif', package="rAvis"))
+>>>>>>> 51b89da6948c7d5eebd10583490f4b862bbd44d2
 
   })
 }
@@ -125,7 +129,7 @@ avisMap<-function(obs, label = '', maptype = 'admin')
 {
   .avisCacheReturnOrSetup(".ravis_img_canarias", function(){
 
-      brick ( system.file('extdata/canarias.tif', package="rAvis"))
+      brick ( system.file('tif/canarias.tif', package="rAvis"))
 
   })
 }

README.Rmd

@@ -0,0 +1,107 @@
+rAvis
+=====
+
+```{r include=FALSE}
+opts_chunk$set(fig.path = "inst/assets/figure")
+```
+
+
+`rAvis`: an R-package to download the information stored in “proyectoavis”, a citizen science bird project.
+
+[Proyectoavis web site](http://proyectoavis.com/cgi-bin/portada.cgi)
+
+## Installation
+
+### Stable version from CRAN:
+
+```{r eval=FALSE}
+install.packages ("rAvis")
+library("rAvis")
+```
+
+### Install with devtools
+
+In the meantime you can install this development version with devtools package
+
+```{r eval=FALSE}
+install.packages("devtools")
+library("devtools")
+install_github("javigzz/rAvis")
+library("rAvis")
+```
+
+Load the library
+
+```{r}
+library("rAvis")
+```
+
+
+## Try some command
+
+### Get species observation data
+
+```{r}
+q <- avisQuerySpecies("bubo bubo")
+head(q)
+```
+
+### Render a map
+
+```{r}
+avisMapSpecies("pica pica")
+```
+
+or with a physical map behind:
+
+```{r}
+avisMapSpecies("pica pica", "phys")
+```
+
+### Disable INFO messages
+
+```{r}
+avisSetup(verbose=FALSE)
+```
+
+
+## See help
+
+Package help for more info
+
+```r
+?rAvis
+```
+
+## Meta
+
+Please report any issues or bugs](https://github.com/ropensci/rAvis/issues).
+
+License: GPL-2
+
+This package is part of the [rOpenSci](http://ropensci.org/packages) project.
+
+To cite package `rAvis` in publications use:
+
+```coffee
+To cite package ‘rAvis’ in publications use:
+
+Javier González Hernández and Sara Varela González (2014). rAvis: Interface to the bird-watching datasets at proyectoavis.com. R
+package version 0.1.2.
+
+A BibTeX entry for LaTeX users is
+
+@Manual{,
+title = {rAvis: Interface to the bird-watching datasets at proyectoavis.com},
+author = {Javier González Hernández and Sara Varela González},
+year = {2014},
+note = {R package version 0.1.2},
+}
+
+ATTENTION: This citation information has been auto-generated from the package DESCRIPTION file and may need manual editing, see
+‘help("citation")’.
+```
+
+Get citation information for `rAvis` in R by `citation(package = 'rAvis')`
+
+[![](http://ropensci.org/public_images/github_footer.png)](http://ropensci.org)

README.md

@@ -1,56 +1,169 @@
 rAvis
 =====
 
-rAvis: an R-package to download the information stored in “proyectoavis”, a citizen science bird project.
 
-# To install from CRAN:
 
-The package is NOT yet stored in CRAN repository. You may try to install it from CRAN from the R console with::
 
-install.packages ("rAvis")
 
-library(rAvis)
+`rAvis`: an R-package to download the information stored in “proyectoavis”, a citizen science bird project.
 
-# Install with devtools
+[Proyectoavis web site](http://proyectoavis.com/cgi-bin/portada.cgi)
+
+## Installation
+
+### Stable version from CRAN:
+
+
+```r
+install.packages("rAvis")
+library("rAvis")
+```
+
+
+### Install with devtools
 
 In the meantime you can install this development version with devtools package
 
-```coffee
+
+```r
 install.packages("devtools")
-library(devtools)
+library("devtools")
 install_github("javigzz/rAvis")
-library(rAvis)
+library("rAvis")
 ```
 
-# Try some command
 
-## Get species observation data
+Load the library
 
-```coffee
+
+```r
+library("rAvis")
+```
+
+
+
+## Try some command
+
+### Get species observation data
+
+
+```r
 q <- avisQuerySpecies("bubo bubo")
+head(q)
 ```
 
-## Render a map
+```
+##   Id..Obs. Nombre.comun   Especie     Fecha Numero              Com.Aut
+## 1    88274    Búho Real Bubo bubo 20-4-2014      2               Aragón
+## 2    87902    Búho Real Bubo bubo 29-3-2014      1               Aragón
+## 3    87516    Búho Real Bubo bubo 12-3-2014      1               Aragón
+## 4    86733    Búho Real Bubo bubo  3-9-2013      1 Comunidad Valenciana
+## 5    86732    Búho Real Bubo bubo  3-9-2013      1 Comunidad Valenciana
+## 6    86731    Búho Real Bubo bubo  3-9-2013      1     Región de Murcia
+##   Provincia     UTM Observador Periodo     Hora    Edad          Sexo
+## 1    Teruel 30TXL41      torri      NA 08:05:00                      
+## 2    Teruel 30TXL52      torri      NA 17:30:00                      
+## 3    Teruel 30TXL41      torri      NA 17:30:00                      
+## 4  Alicante 30SXH80  p.perales      NA 21:00:00  adulto         macho
+## 5  Alicante 30SXH80  p.perales      NA 21:03:00 juvenil indeterminado
+## 6    Murcia 30SXH80  p.perales      NA 21:00:00  adulto         macho
+##                  Interes Grado.Reprod. Categ.Fenol.              Habitat
+## 1                                    0            0                     
+## 2                                    0            0                     
+## 3    reproducción segura            11            0                     
+## 4                                   16            3 roquedos de interior
+## 5 comportamiento inusual             0            3   terrenos agrícolas
+## 6                                   16            3 roquedos de interior
+##   Codigo.de.Habitat
+## 1                NA
+## 2                NA
+## 3                NA
+## 4                NA
+## 5                NA
+## 6                NA
+##                                                                                    Notas
+## 1 barranco la Salobre - RUBIELOS de la CERIDA. DDAK 250m. S.O. 1 adulto y 1 pll al menos
+## 2                                  Arroyo de los Calderones - TORRE los NEGROS. Con JMPS
+## 3           Rambla del Ramblon  fuente la Salobre - RUBIELOS de la CERIDA. Con SMO y CAL
+## 4                                                                                       
+## 5                                      Posado sobre poste eléctrico a plena luz del día-
+## 6                                                                                       
+##         x     y
+## 1 -1.2818 40.77
+## 2 -1.1609 40.86
+## 3 -1.2818 40.77
+## 4 -0.8937 37.97
+## 5 -0.8937 37.97
+## 6 -0.8937 37.97
+```
 
-```coffee
+
+### Render a map
+
+
+```r
 avisMapSpecies("pica pica")
 ```
 
+![plot of chunk unnamed-chunk-6](inst/assets/figureunnamed-chunk-6.png) 
+
+
 or with a physical map behind:
 
-```coffee
+
+```r
 avisMapSpecies("pica pica", "phys")
 ```
 
-## Disable INFO messages
+![plot of chunk unnamed-chunk-7](inst/assets/figureunnamed-chunk-7.png) 
 
-```coffee
-avisSetup(verbose=FALSE)
+
+### Disable INFO messages
+
+
+```r
+avisSetup(verbose = FALSE)
 ```
 
 
-# See help
+
+## See help
 
 Package help for more info
 
-??rAvis
+```r
+?rAvis
+```
+
+## Meta
+
+Please report any issues or bugs](https://github.com/ropensci/rAvis/issues).
+
+License: GPL-2
+
+This package is part of the [rOpenSci](http://ropensci.org/packages) project.
+
+To cite package `rAvis` in publications use:
+
+```coffee
+To cite package ‘rAvis’ in publications use:
+
+Javier González Hernández and Sara Varela González (2014). rAvis: Interface to the bird-watching datasets at proyectoavis.com. R
+package version 0.1.2.
+
+A BibTeX entry for LaTeX users is
+
+@Manual{,
+title = {rAvis: Interface to the bird-watching datasets at proyectoavis.com},
+author = {Javier González Hernández and Sara Varela González},
+year = {2014},
+note = {R package version 0.1.2},
+}
+
+ATTENTION: This citation information has been auto-generated from the package DESCRIPTION file and may need manual editing, see
+‘help("citation")’.
+```
+
+Get citation information for `rAvis` in R by `citation(package = 'rAvis')`
+
+[![](http://ropensci.org/public_images/github_footer.png)](http://ropensci.org)